Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_028906.1 Length=75933 Score E Sequences producing significant alignments: (Bits) Value seq211 269 1e-67 seq1143 266 2e-66 seq7489 239 2e-58 seq4107 105 3e-18 seq1862 95.1 6e-15 seq1863 82.4 4e-11 >seq211 Length=76543 Score = 269 bits (298), Expect = 1e-67 Identities = 541/798 (68%), Gaps = 13/798 (2%) Strand=Plus/Plus Query 66471 CCACCGGCTCTATCGCTCTGGACGGCGCCCTGGGCATCGGGGGGTACCCGAGGGGCCGGG 66530 |||| |||||| | | ||||||| ||| || ||||| || || || | ||||| Sbjct 35751 CCACTGGCTCTCTGGGTCTGGACATCGCGCTCGGCATTGGCGGCCTGCCAAAAGGCCGTA 35810 Query 66531 TGGTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTGTGTCTCCACGCGGTGG 66590 | || || |||||||| || |||||||| || || | || ||| || | | | | Sbjct 35811 TCGTTGAGATCTACGGTCCTGAATCTTCCGGTAAAACCACCCTGACCCTGTCGGTGATTG 35870 Query 66591 CCAATGCGCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCTGAGCACTCCCTGGACC 66650 || | || || || || | || | || | | |||| || |||||| ||||||| | Sbjct 35871 CCCAGGCACAAAAAATGGGCGCCACCTGTGCGTTCGTCGATGCCGAGCACGCCCTGGATC 35930 Query 66651 CTGAGTACGCCAAGGC--GCTCGGTGTGGACCTCGACAACCTCGTGGTGGTTCAGCCCGA 66708 |||| |||||| ||| ||| || || || | ||| |||| |||| || || || Sbjct 35931 CTGAATACGCC--GGCAAGCTGGGCGTCAACGTTGACGACCTGCTGGTTTCGCAACCGGA 35988 Query 66709 TACCGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGCGAGCTGTCCAT 66768 ||||| ||||| || ||||| ||| ||| | || || || || | | | Sbjct 35989 CACCGGTGAGCAAGCGCTGGAAATCACCGACATGCTGGTGCGCTCCAACGCCATCGACGT 36048 Query 66769 CGTCGTCGTTGACTCCGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAAGGCGACATCGG 66828 |||| || ||||||||||| |||||||| || || || |||||||||| || || Sbjct 36049 GATCGTGGTCGACTCCGTGGCAGCCCTGGTACCCAAGGCTGAAATCGAAGGCGAAATGGG 36108 Query 66829 GGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCACAGGCCATGCGCAAGCTCACTGG 66888 |||| ||||| ||||| || || ||| | ||||| |||||| |||| || |||| || Sbjct 36109 CGACATGCACGTGGGCCTTCAAGCCCGCTTGATGTCCCAGGCCCTGCGTAAAATCACCGG 36168 Query 66889 CACCATCTCCAGCACCAACACGCTGACGCTCTGGGTCAACCAGTTGCGCGAGAAGATCGG 66948 | |||| | | ||||| || | ||| |||||||| | || ||||||||| Sbjct 36169 TAACATCAAGAACGCCAACTGCTTGGTGATCTTCATCAACCAGATCCGGATGAAGATCGG 36228 Query 66949 CAACGTGGGCTACGGCCCGAATGAGACCACCACGGGCGGAAAGGCTTTGAGGTTCTACGC 67008 | || | | ||||| || |||||||| || || || || ||| ||||||||| Sbjct 36229 CGTGATGTTCGGCAGCCCG---GAAACCACCACCGGTGGTAACGCGCTGAAGTTCTACGC 36285 Query 67009 CTCAGTCCGTATGGATGTCCGTCGCATCGCCACCGAGAAGGAAGGCGATGAGGCTGTCGG 67068 || |||||| |||| ||||||| | | | | | ||||||||| || |||| ||| || Sbjct 36286 TTCGGTCCGTCTGGACATCCGTCGTACTGGCGCGGTGAAGGAAGGTGACGAGGTTGTTGG 36345 Query 67069 CAACCGCACCCGGGTGAAGGTCGTCAAGAACAAGCTGGCCCCGCCGCACCGCAATGCCGA 67128 | | ||||| || || ||||| ||||||||| ||||||||||| ||| | ||||| Sbjct 36346 TAGCGAAACCCGCGTTAAAGTCGTGAAGAACAAGGTGGCCCCGCCGTTCCGTCAGGCCGA 36405 Query 67129 GTTCTCCGTCGTGTACGGGGAGGGCATCTCGCGTGAGGTCGAACTCCTCGACCTGGCCGT 67188 |||| | | ||||| |||| |||| | | | ||| | ||||||||| ||| Sbjct 36406 GTTCCAGATTCTCTACGGCAAGGGTATCTACCTGAACGGCGAGATGATCGACCTGGGCGT 36465 Query 67189 GTCGCAGGGCCTGGTGAAGAAGTCGGGCGCCTGGT---TCAAGTACGGGGACAAGAACGT 67245 | ||| || | || |||| || || ||||||| | | |||| ||||| | Sbjct 36466 GCTGCACGGTTTCGTCGAGAAATCCGGTGCCTGGTATGCCTACAACGGCAGCAAGA---T 36522 Query 67246 CGCCCAGGGCAAGCCCAA 67263 || |||||||||| |||| Sbjct 36523 CGGCCAGGGCAAGGCCAA 36540 >seq1143 Length=31399 Score = 266 bits (294), Expect = 2e-66 Identities = 548/804 (68%), Gaps = 21/804 (3%) Strand=Plus/Plus Query 66473 ACCGGCTCTATCGCTCTGGACGGCGCCCTGGGCATCGGGGGGTACCCGAGGGGCCGGGTG 66532 ||||| || ||| ||||| ||| |||||| | || || | ||| | ||||| ||| Sbjct 23731 ACCGGTTCGCTCGGCCTGGATATCGCGCTGGGCGTGGGCGGCTTGCCGCGCGGCCGCGTG 23790 Query 66533 GTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTGTGTCTCCACGCGGTGGCC 66592 |||||||||||||| || ||||| || || || | || ||| || || | | || Sbjct 23791 GTGGAAATCTACGGTCCGGAATCGTCGGGTAAAACCACCCTGACCCTGCAAACCATTGCT 23850 Query 66593 AATGCGCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCTGAGCACTCCCTGGACCCT 66652 | ||| || || || | | ||||| ||||| || |||||| | || ||| Sbjct 23851 GAAATGCAAAAACTGGGCGGTACCTGCGCCTTTATCGATGCCGAGCACGCGCTCGACGTC 23910 Query 66653 GAGTACGCCAAGGCGCTCGGTGTGGACCTCGACAACCTCGTGGTGGTTCAGCCCGATACC 66712 | ||||| | ||| || ||| |||| | | | || | ||||| ||||| Sbjct 23911 GGCTACGCGCAAAAGCTGGGCGTGAACCTGCATGAATTGCTGATTTCGCAGCCGGATACG 23970 Query 66713 GGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGCGAGCTGTCCA--TCG 66770 ||||||||||| ||||| ||| ||| |||||| ||| ||| ||| ||| | ||| Sbjct 23971 GGCGAGCAGGCGCTGGAAATCTGCGACGCCCTCGTGCGGTCGGGC-AGC-GTCGACCTCG 24028 Query 66771 TCGTCGTTGACTCCGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAAGGCGACATCGGGG 66830 | ||| | ||||||||||| || ||| ||| ||||||||| ||||||||||||| || | Sbjct 24029 TTGTCATCGACTCCGTGGCCGCACTGACGCCACGCGCCGAGATCGAAGGCGACATGGGTG 24088 Query 66831 ACAGTCACGTC--GGCCTGCACGCGCGCCTCATGTCACAGGCCATGCGCAAGCTCACTGG 66888 | || | | |||||||| |||||||| ||||| || || |||||||||| || || Sbjct 24089 AT--TCCCTGCCGGGCCTGCAAGCGCGCCTGATGTCGCAAGCGCTGCGCAAGCTGACCGG 24146 Query 66889 CACCATCTCCAGCACCAACACGCTGACGCTCTGGGTCAACCAGTTGCGCGAGAAGATCGG 66948 ||||| | |||| || || ||| ||| |||||||| | ||| ||||||||| Sbjct 24147 TTCCATCAACCGCACGAATACCCTGGTCATCTTCATCAACCAGATCCGCATGAAGATCGG 24206 Query 66949 CAACGTGGGCTACGGCCCGAATGAGACCACCACGGGCGGAAAGGCTTTGAGGTTCTACGC 67008 | || | | ||||| || |||||||| ||||| || || ||| |||||||| Sbjct 24207 CGTGATGTTCGGCAGCCCG---GAAACCACCACCGGCGGCAATGCCCTGAAATTCTACGC 24263 Query 67009 CTCAGTCCGTATGGATGTCCGTCGCATCGCCACCGAGAAGGAAGGCGATGAGGCTGTCGG 67068 || || || |||| |||| |||| || | | ||| |||||||| | |||| Sbjct 24264 GTCCGTGCGCCTGGACATCCGCCGCACCGGCTCGATCAAGTCCGGCGATGAAGTGATCGG 24323 Query 67069 CAACCGCACCCGGGTGAAGGTCGTCAAGAACAAGCTGGCCCCGCCGCACCGCAATGCCGA 67128 |||| ||| ||| |||||||||||||||||| | || || ||| | | || | Sbjct 24324 CAACGAAACCAAGGTCAAGGTCGTCAAGAACAAGATCGCGCCACCGTTCAAGGAAGCGCA 24383 Query 67129 GTTCTCCGTCGTGTACGGGGAGGGCATCTCGCGTGAGGTCGAACTCCTCGACCTGGCCGT 67188 ||| | || ||||||| | |||| ||||| || | |||| |||| ||||||| || Sbjct 24384 CTTCGACATCCTGTACGGCGCCGGCACGTCGCGCGAAGGCGAAATCCTGGACCTGG--GT 24441 Query 67189 GTCGCAGGGC---CTGGTGAAGAAGTCGGGCGCCTGGTTCAAGTACGGGGACAAGAACG- 67244 ||| | | | | ||| |||| || || | |||| || ||| | | ||||| Sbjct 24442 -TCGGACGCCAAGATCGTGGAGAAATCCGGTTCGTGGTACAGCTACAACGGC--GAACGC 24498 Query 67245 -TCGCCCAGGGCAAGCCCAAGGCC 67267 ||| |||||||||| ||| ||| Sbjct 24499 ATCGGCCAGGGCAAGGACAACGCC 24522 >seq7489 Length=570 Score = 239 bits (264), Expect = 2e-58 Identities = 394/564 (70%), Gaps = 21/564 (4%) Strand=Plus/Plus Query 66578 CTCCACGCGGTGGCCAATGCGCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCTGAG 66637 || ||||| || |||||||| ||| ||| |||| ||| || | ||||||||| ||| Sbjct 11 CTGCACGCAGTTGCCAATGCTCAGGCCAACGGCGGCATCGCGGCGTTCATCGACGCGGAG 70 Query 66638 CACTCCCTGGACCCTGAGTACGCCAAGGC--GCTCGGTGTGGACCTCGACAACCTCGTGG 66695 ||| | || || || || || || || | ||| || || || ||| ||| ||| Sbjct 71 CACGCACTCGATCCCGACTATGC--AGCCAAGCTGGGCGTCGATACCGATGCACTCCTGG 128 Query 66696 TGGTTCAGCCCGATACCGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTG 66755 | ||||| || || || ||||||||||| || ||| ||| | || || || | Sbjct 129 TCTCGCAGCCGGACACGGGTGAGCAGGCCCTCGAAATCACCGACATGCTGATCCGTTCAG 188 Query 66756 GCGAGCTGTCCATCGTCGTCGTTGACTCCGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCG 66815 ||| || ||||||||| | ||||||||||| || || || || ||||||||| ||| Sbjct 189 GCGCCCTCGACATCGTCGTGATCGACTCCGTGGCCGCTCTTGTTCCTCGCGCCGAGATCG 248 Query 66816 AAGGCGACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCACAGGCCATGC 66875 ||||||| || || ||||| |||||||| |||| || || || ||| ||||| ||| Sbjct 249 AAGGCGAGATGGGTGACAGCCACGTCGGTTTGCAGGCTCGACTGATGAGCCAGGCGCTGC 308 Query 66876 GCAAGCTCACTGGCACCATCTCCAGCAC---CAACACGCTGACGCTCTGGGTCAACCAGT 66932 ||||| |||| || |||| || | | || ||| | | ||| |||||||| Sbjct 309 GCAAGATCACCGGTGCCATGAACAACTCGGGCACCACCGTCA---TCTTCATCAACCAGC 365 Query 66933 TGCGCGAGAAGATCGGCAACGTGGGCTACGG----CCCGAATGAGACCACCACGGGCGGA 66988 | |||||||||||||| ||| | ||| |||||| |||||||| || || Sbjct 366 TTCGCGAGAAGATCGG---TGTGATGTTCGGTTCTCCCGAA----ACCACCACCGGTGGT 418 Query 66989 AAGGCTTTGAGGTTCTACGCCTCAGTCCGTATGGATGTCCGTCGCATCGCCACCGAGAAG 67048 ||||| ||| ||||||||| || ||||| | || ||||||| |||| || ||| Sbjct 419 AAGGCACTGAAGTTCTACGCTTCGGTCCGCCTCGACATCCGTCGTATCGAAACTCTCAAG 478 Query 67049 GAAGGCGATGAGGCTGTCGGCAACCGCACCCGGGTGAAGGTCGTCAAGAACAAGCTGGCC 67108 || || || || || || |||||||| || || |||||||||||||||||| | || Sbjct 479 GACGGTACCGACGCAGTGGGTAACCGCACTCGCGTCAAGGTCGTCAAGAACAAGGTCGCG 538 Query 67109 CCGCCGCACCGCAATGCCGAGTTC 67132 |||||| | | ||||||||| Sbjct 539 CCGCCGTTCAAGCAGGCCGAGTTC 562 >seq4107 Length=847 Score = 105 bits (116), Expect = 3e-18 Identities = 128/174 (74%), Gaps = 3/174 (2%) Strand=Plus/Plus Query 66940 GAAGATCGGCAACGTGGGCTACGGCCCGAATGAGACCACCACGGGCGGAAAGGCTTTGAG 66999 |||||||||| ||| | ||| || ||| ||||| |||||||| || || ||| Sbjct 2 GAAGATCGGC---GTGATGTTCGGTTCGCCTGAAACCACGACGGGCGGCAATGCGCTGAA 58 Query 67000 GTTCTACGCCTCAGTCCGTATGGATGTCCGTCGCATCGCCACCGAGAAGGAAGGCGATGA 67059 ||||| || || || ||| | ||| |||| ||||||| | ||||||| | || || Sbjct 59 ATTCTATGCTTCGGTGCGTCTCGATATCCGCCGCATCGGTGCGCTGAAGGAACGTGACGA 118 Query 67060 GGCTGTCGGCAACCGCACCCGGGTGAAGGTCGTCAAGAACAAGCTGGCCCCGCC 67113 || |||||||||| ||||| || ||||| |||||||||||||| || || || Sbjct 119 GGTGGTCGGCAACCAGACCCGCGTCAAGGTGGTCAAGAACAAGCTTGCGCCCCC 172 >seq1862 Length=5913 Score = 95.1 bits (104), Expect = 6e-15 Identities = 135/188 (72%), Gaps = 4/188 (2%) Strand=Plus/Plus Query 60334 GACGGCGACGCCACATTCCTCCGCTGCACCATCTGGCGCGACGCCGCCGAGAACGTGGCG 60393 |||||||| || ||| | || |||| |||||||||||| || ||||||||||| ||| Sbjct 5330 GACGGCGATGCGCTGTTCATGCGTTGCAACATCTGGCGCGAAGCAGCCGAGAACGTCGCG 5389 Query 60394 GAAAGCCT--CCAGAAAGGCCAGCGCGTCATCGTGCATGGCTACCTCAAGCAGCGCTCCT 60451 || ||| | || | || || || |||||| ||| ||||||||||| || | Sbjct 5390 GAGAGCTTGACCCG--TGGTTCACGAGTAATCGTGAGCGGCCGGCTCAAGCAGCGTTCGT 5447 Query 60452 TCGAGACCAAGGAGGGCGACAAGCGCACCGTCATCGAGGTGGAGGTAGACGAGATCGGCC 60511 ||| || |||||||| ||||| || ||| ||||| | || || || || ||||| | Sbjct 5448 ACGAAACTCGCGAGGGCGAAAAGCGAACTGTCGTCGAGCTCGAAGTCGATGAAATCGGTC 5507 Query 60512 CGTCGCTG 60519 | || ||| Sbjct 5508 CTTCACTG 5515 >seq1863 Length=4856 Score = 82.4 bits (90), Expect = 4e-11 Identities = 142/202 (70%), Gaps = 6/202 (3%) Strand=Plus/Minus Query 50491 CAACCACCCCAGGACCTAGCCGCCGAGTCAG-CAGTCCTCGGCGCCATGCTTCTCTCCAA 50549 || ||||| |||||| | | |||||| ||| | || ||||||| |||||| || ||| Sbjct 3709 CAGCCACCTCAGGACATGACTGCCGAG-CAGTCGGTGCTCGGCGGCATGCTGCTGAGCAA 3651 Query 50550 GAACGCCACCCCGGCCGTCATGGAGATTCTCAAGCCCGAGGACTTCTACCGCCCCAACCA 50609 | |||||| | | | |||| | ||| | || || | ||||||||||| ||| || Sbjct 3650 GGACGCCATCGCTGACGTCCTCGAGGTACTGCGTCCGGGTGACTTCTACCGGCCCGCTCA 3591 Query 50610 CGCCACCGTCTACCAGATCATCACCGACCTCTACATGGCC--GGTGAGTCCGCCGACGTC 50667 | |||||||| | | ||| |||||||||| ||| || ||| |||||||| Sbjct 3590 CCAGTCCGTCTACGACGTGATCCTGGACCTCTACA--GCCGTGGCGAGCCCGCCGACCCG 3533 Query 50668 ATCACCGTCGCCGCGGAGCTCG 50689 | || ||| |||| ||||||| Sbjct 3532 GTGACGGTCTCCGCCGAGCTCG 3511 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 242819347076670