Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_028943.1 Length=29237 Score E Sequences producing significant alignments: (Bits) Value seq367 105 1e-18 >seq367 Length=135625 Score = 105 bits (116), Expect = 1e-18 Identities = 288/432 (67%), Gaps = 13/432 (3%) Strand=Plus/Plus Query 7465 CCCGACGTTCTCCGGCTTGCCGCCCATCAACTGAAAGGGGATGCGGTGCGCGTCCAGCAG 7524 |||| |||||| |||| | |||||||||||| || ||||| ||| | ||||| Sbjct 45066 CCCG-CGTTCTGCGGCACGATGCCCATCAACTGCGGTGGAATGCGCAACGCCGCGAGCAG 45124 Query 7525 GTCAGCGGCGCTGGCTTTTTTGATATTaaaaaaaTCGTCCTTCGTTGCCACTTCACTGAG 7584 || | |||| |||||||| || |||||||| | || || || || | Sbjct 45125 ATCGTCACGGCTGATGTTTTTGATCGAGCTGAATTCGTCCTTGGCCGCAACCTCGCTCAC 45184 Query 7585 CGGGATAATTTTAATGCCGTCGGCTTTCC--CCTGCGGG-GCATAGAGAAACAGATTTTT 7641 |||||| | | ||||||||| |||| ||||| || || || | |||||| || Sbjct 45185 CGGGATGAGCTGAATGCCGTC---TTTCTTGCCTGCCGGCGCGTACACAAACAGGTTGCG 45241 Query 7642 AAAGTTGTTGCGGCCTTTCGACTTGACCA-TGTTTTCGCGAAGCATTTCGATATCGTTGC 7700 ||||||| | |||||||| || || || | ||| || ||||| || | Sbjct 45242 AAAGTTGCCTGGCCCTTTCGAGTTCTTCAGTGCGGT-GCGCAGTGAGTCGATGTCCTCTT 45300 Query 7701 GATCCTGCACGGCATCGGTGACGTACATGATATATCCGGCATGAGCGCCGTTTTCGTAAT 7760 | |||| | || ||||| | ||||| || | |||||||| |||||| | ||| | Sbjct 45301 CCTTCTGCGCCGCGTCGGTCATGTACAGAATGAAACCGGCATGGCTGCCGTTGTTGTAGT 45360 Query 7761 ACTTGCGGCGGAACAGCGTGGCCGACTCATTCAGCCAGGCAGAATTAAGGGCGCTG--AG 7818 ||||||| |||||||||||||| ||| || ||| || || |||||| || Sbjct 45361 ACTTGCGCCGGAACAGCGTGGCGCTCTCGTTGAGCAGTGC--GCTTTGCAGCGCTGCCAG 45418 Query 7819 ATATTCCGGCAGGCCGTACAGCTCCTGATTAATATCCGGCTCCAGCAGGTGAAACACGGA 7878 | |||||||||||||| | ||||| || ||||| | ||| ||| ||| | | || Sbjct 45419 CCACTCCGGCAGGCCGTAGATTTCCTGGTTGATATCGGCCTCGCGCAAGTGGCAGATCGA 45478 Query 7879 GCCGGGCGCGAA 7890 ||||| || || Sbjct 45479 ACCGGGGGCAAA 45490 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 93421260584190