Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_028945.1 Length=206713 Score E Sequences producing significant alignments: (Bits) Value seq7603 122 1e-22 seq6140 93.3 6e-14 seq160 84.2 3e-11 >seq7603 Length=749 Score = 122 bits (134), Expect = 1e-22 Identities = 211/307 (69%), Gaps = 0/307 (0%) Strand=Plus/Minus Query 181324 TCAGTGTCGGCAAAGCCAACGGTTCGCGGTCAAGCTGTTCCTTCACCTGATCGAAGTGAT 181383 |||| |||||||| | || |||||||||| | ||||| || ||||||| |||| ||||| Sbjct 744 TCAGGGTCGGCAACGGCAGCGGTTCGCGGCCGAGCTGCTCGGTCACCTGGTCGACGTGAT 685 Query 181384 TGTTGTAGATGTGGGTATCACCAAGGTTGCCGATCAGTTCCCCGACTTCAAGACCACATT 181443 ||| |||||||||| || || | | | || | || ||||| || || || | Sbjct 684 TGTCGTAGATGTGGCAGTCGCCGCCGGTCCAGACGAACTCGCCGACGTCGAGTCCGGCCT 625 Query 181444 CCAGCGCGATCAGATGTGTCAGGAGCGCGTAAGAGGCGATGTTGAAGGGAAGCCCCAAGA 181503 | | || |||| || || || |||||||| |||||||||||| |||| || | || Sbjct 624 GCTGGGCCATCATGTGGGTGAGCAGCGCGTAGCTGGCGATGTTGAACGGAACGCCGAGGA 565 Query 181504 AGACGTCCACGGACCGCTGATTCCAAAGGCAGGACAGTTTGTCATTGCGAACATAGAACT 181563 | | ||| || ||||| | | ||||||| || ||| | | | || ||||||| Sbjct 564 ACATGTCGGCGCTGCGCTGGTACAGCTGGCAGGAGAGCTTGCCGTCGGCGACGTAGAACT 505 Query 181564 GGAATCCGTAGTGGCACGGCGGCAAAGCCATTAGATCGACCGCGCCGACATTCCAAGCCG 181623 |||| ||||||||||| || ||||| | | || |||| ||||| |||| Sbjct 504 GGAAGAAAGCGTGGCACGGCGCCAGGGCCATCTGCGGAATGTCGGCGACGTTCCACGCCG 445 Query 181624 AGACCAT 181630 | || || Sbjct 444 AAACGAT 438 >seq6140 Length=1248 Score = 93.3 bits (102), Expect = 6e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 181971 AGTTTCTTGGTGGTCACGGCAGGAAAGCCCTTGGACAGGTCGAAACGTATCTGGCGACCA 182030 ||||||||||| |||| ||||||||| ||| ||||| ||||| || |||||| || Sbjct 865 AGTTTCTTGGTCGTCAGGGCAGGAAAACCCGCCGACAGATCGAATCGCATCTGGTAGCCG 924 Query 182031 AATACGGACCTTGTGCCAGTTCCGGTACGATCATCGGCATCGACGCCGTTTTCCAGCAC 182089 || ||||| | |||||| || |||||||| || || ||||||||| | || ||||| Sbjct 925 AAAACGGAACGTGTGCCTGTCCCGGTACGGTCGCCGCGGTCGACGCCGGTATCGAGCAC 983 >seq160 Length=487619 Score = 84.2 bits (92), Expect = 3e-11 Identities = 65/76 (86%), Gaps = 1/76 (1%) Strand=Plus/Plus Query 96755 TGCGGGGTAGTAGCAGTGGTTAGCTCGTCTGCCTCATAAGCAGAAGGTCATCAGTTCGAA 96814 |||||||| | |||||| | ||||||||| | ||||||| | ||||||||||||||||| Sbjct 383274 TGCGGGGTGG-AGCAGTTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCATCAGTTCGAG 383332 Query 96815 TCTGATCCCCGCAACC 96830 |||| ||||||| ||| Sbjct 383333 TCTGGTCCCCGCTACC 383348 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 661237821785400