Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_028953.1 Length=110764 Score E Sequences producing significant alignments: (Bits) Value seq6367 131 1e-25 seq249 123 2e-23 >seq6367 Length=825 Score = 131 bits (144), Expect = 1e-25 Identities = 202/286 (71%), Gaps = 2/286 (1%) Strand=Plus/Minus Query 97544 TGGCGCACGCCGGCTT-CCTGCATCTGCCGGTACCGGTCATCCATCTCCACGGTGAGCCA 97602 || ||||| |||| | ||||||| | | |||| || | ||||||||| || | ||| Sbjct 541 TGACGCAC-CCGGTTGGCCTGCATGTCCTGGTAGCGCTGTTCCATCTCCTCGACCAACCA 483 Query 97603 CCGCAGCGTCTTAACCGCCTCGTCGGGCTCGGTGACCACCGGCTGCAAAAGGTGGGGGAT 97662 ||||| | |||| | |||| |||| | |||| | ||||| ||||| Sbjct 482 GGCCAGCGCTGCCGCTGCCTTCTTCGGCTGAGTGATGATCGGCGTGATCAGGTGCGGGAT 423 Query 97663 ACCGTTGTACGGGGTGAGTTCCACCATCTTCGGGTCGATCATGATGAGTTTGACCCGATC 97722 ||| | |||||| ||||| || |||||||| |||||||| | ||| | || || Sbjct 422 ACCTTCGTACGGCGTGAGCTCGACCATCTTGGGGTCGATGAGGATCATCCGTACTTCTTC 363 Query 97723 AGGATTGGCTCGGTAGAGCATGGAAACCAGCATCGAGTTGATGAAGCTGGACTTACCTGA 97782 || | |||||| ||||| || || ||||||||||| | |||||| |||| ||| || Sbjct 362 CGGCGTTGCTCGGGTGAGCAACGAGACGAGCATCGAGTTCACGAAGCTCGACTAACCCGA 303 Query 97783 TCCGGTGGCGCCAGCCACCAGCAGGTGCGGCATTTTGGCCAGGTTC 97828 ||||| | ||| |||||||| ||||| ||||| || || |||||| Sbjct 302 GCCGGTCGAGCCTGCCACCAGAAGGTGGGGCATCTTCGCGAGGTTC 257 Score = 118 bits (130), Expect = 8e-22 Identities = 150/204 (74%), Gaps = 3/204 (1%) Strand=Plus/Minus Query 97322 GTGGCGAACGAGAGCCTAGACGGCACGTTGGATTTGATAAGGCCTGTGACTACATCCACG 97381 || ||||||| || | || |||||||||| ||||| ||||| ||||| || || ||| Sbjct 820 GTCGCGAACGCCAGACGCGAAGGCACGTTGGTCTTGATCAGGCCGGTGACGACGTCGACG 761 Query 97382 GAGGGCCGCTGCGTCGCCAGGACGAGATGAATACCGGCTGCGCGCGCCTTCTGGGCGATG 97441 || || |||||||| ||||| || || || |||||||| || || || ||||| | |||| Sbjct 760 GACGGGCGCTGCGTTGCCAGCACCAGGTGGATACCGGCAGCACGGGCTTTCTGCGTGATG 701 Query 97442 CGGACAATGTTGGCCTCGACTTCTTTCTTGTAGCCGCCCATCATGAGGTCTGCGAGTTCG 97501 ||||| || | ||||| || | | || | | |||||||||||||| || ||| Sbjct 700 CGGACGATTGCTTCTTCGACGTCGCGC--GGCGCGGTC-ATCATGAGGTCTGCCAGCTCG 644 Query 97502 TCGACCACTACCACGATGTAGGGG 97525 || || | | | |||||||||| Sbjct 643 TCCACGATCGCGAGGATGTAGGGG 620 >seq249 Length=98374 Score = 123 bits (136), Expect = 2e-23 Identities = 235/338 (70%), Gaps = 15/338 (4%) Strand=Plus/Minus Query 97188 CGTCGGATACGAAAGCGCCCTGTATCCGGAT-GGCACCCCGCGCCCCCACGGGCAGGAAT 97246 ||||||| ||||| ||||| || | ||||| |||| | | ||| ||| || | | Sbjct 86403 CGTCGGAGACGAACGCGCCGTGAACACGGATCGGCAAACTGGTGCCCGGCGG-CATGTAG 86345 Query 97247 AACCCGTCACCCATTCCCATGAGCTGCTCGGCTCCGCCCTCGTCCAGGATCACCCGGCTA 97306 | | |||||| |||| || |||||||| ||||||| ||| | ||| |||| | Sbjct 86344 AGCATGTCACCGTGGCCCAGCAGTTGCTCGGCGCCGCCCTGGTCGATGATGGTCCGGGAA 86285 Query 97307 TCGGT---GAGTGATGCTGTGGCGAACGAGAGCCTAGACGGCACGTTGGATTTGATAAGG 97363 ||| | | || | ||| |||| | | | ||| | ||||| ||||| ||| Sbjct 86284 TCGATCTTGCTCGACACC-TGG--AACGCCATGCGGGTCGGGATGTTGGCCTTGATCAGG 86228 Query 97364 CCTGTGACTACATCCACGGAGGGCCGCTGCGTCGCCAGGACGAGATGAATACCGGCTGCG 97423 || |||| || ||||| || || ||||| ||||| |||| | || || ||||| || Sbjct 86227 CCGGTGATCACGTCCACCGACGGACGCTGGGTCGCGAGGATCAAGTGGATCCCGGCGGCC 86168 Query 97424 CGCGCCTTCTGGGCGATGCGGACAAT--GTTGGCCTCGACTTCTTTCTTGTAGCCGCCCA 97481 ||||||||||||||||| ||| | || ||| | |||| | |||||| | || || Sbjct 86167 CGCGCCTTCTGGGCGATACGGGCGATCAGTT--CTTCGA---CCTTCTTGCCGACGATCA 86113 Query 97482 TCATGAGGTCTGCGAGTTCGTCGACCACTACCACGATG 97519 |||| | ||| || | |||||||||||| ||||||||| Sbjct 86112 TCATCATGTCGGCAAATTCGTCGACCACCACCACGATG 86075 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354259522558625