Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_028976.1 Length=50113 Score E Sequences producing significant alignments: (Bits) Value seq2405 672 0.0 seq26 100 9e-17 seq845 98.7 3e-16 seq11514 93.3 1e-14 >seq2405 Length=2039 Score = 672 bits (744), Expect = 0.0 Identities = 1313/1917 (68%), Gaps = 46/1917 (2%) Strand=Plus/Plus Query 38769 TGTGCGAGCCCATGCCCATCGGACCCGGACGGTACAGCGCCACGACGGCGGAGATGTCCT 38828 |||| | | ||| |||||||| ||||| || |||||||||| | ||||| |||||| Sbjct 14 TGTGGGCGTCCACACCCATCGGTCCCGGTCGATACAGCGCCAAGGCGGCGACGATGTCGC 73 Query 38829 CGAA-CTGGTCCGGCTTCAGCAGGCGGAGCAGGGAGCGCATCGCGCCGCCGTCGAGCTGG 38887 |||| | ||| |||| || ||| |||| |||||| ||||||||||||||||| Sbjct 74 CGAATCCGGTG-GGCTGCATCAGTTTCAGCAACTCGCGCATACCGCCGCCGTCGAGCTGG 132 Query 38888 AACACCGAGAGCGTGTCGCCCCTGGCCAGCAGCTCGTACGTCGCGGGGTCATCCAGCGGG 38947 ||||| ||| ||||| || | ||| ||||| ||||| || || | || |||| ||| Sbjct 133 AACACACCGAGAGTGTCACCGCGGGCGAGCAGTTCGTATGTTGCCGCATCGTCCATCGGC 192 Query 38948 ATGTTCTCGATGTCGACGTGCTCACCACGGTTGCGGCGGATGTTCTCGACCGCGTCGCCC 39007 | | |||| ||||| || || |||||| ||||||||||| || |||||| Sbjct 193 AAAGTGTCGAGGTCGAGGTCGATGCCGCGGTTGGCTTTGATGTTCTCGAGCGTGTCGCCG 252 Query 39008 ATGATCGTGAGGTTCCGGAGCCCGAGGAAGTCCATCTTCAGCAGGCCCAGAGCCTCGCAG 39067 |||| ||||||||| || || ||||||||||||||||| |||||||| | || || || Sbjct 253 ATGACCGTGAGGTTTCGCAGACCGAGGAAGTCCATCTTGAGCAGGCCGATGGCTTCACAC 312 Query 39068 CTCGGGTAGTCGAACTGCGTGATCGTTACGCCGTCCGCAGGCCGCACCCACGTCGGGATG 39127 |||||||| || ||||| || |||||||| | ||| ||| |||||| Sbjct 313 GAAGGGTAGTCCCACCCGGTGATGATTGCGCCGTCCTGGGCGCGCTTCCAGACCGGGATT 372 Query 39128 TGATCGACCAGCGGCTCGTCGGACATGATCACACCGGCTGCGTGCACGCCCATCTGCCGG 39187 ||| ||||| ||| |||||||| || || |||||||| || | ||| Sbjct 373 GCGTCGGTGAGCGGTTCGGACGACATGATGACCGCGCAGGCGTGCACACCGGCGTTACGG 432 Query 39188 ACGAGACCTTCGAGGCCACGCGCGAGGTCAATGACCTCCTTCGCG---TCCTTGTCGTTC 39244 | || || || || || ||| ||| | || |||||| ||| | | Sbjct 433 ATCAGCCCCTCCAGACCCACCGCA--GTCTTGTAGATC-TTCGCGACGTCCGGGCTGGAG 489 Query 39245 TCGTACAGCGCCCGGATCTCGCCCGCCTCGTCGTAGCGCGGGTGCTCCGGGTTGGTGATG 39304 ||| || || || | |||| | ||||| | ||| ||| ||||| ||| | |||||| Sbjct 490 TCGATGAGTGCTCGAACCTCGACGGCCTCCTTGTACCGCTCGTGCTTCGGATCGGTGATA 549 Query 39305 CCCTCCAGGGGCATCGACGCGCCCATCACATCGGC--CGGGTACGCCTTGGTCAGCTTCT 39362 || | | || | | |||| | | ||| |||| |||||||| | || | Sbjct 550 CCGGAGACAGAGATGTCCTTGGCCATGA--TGGGCGGCGGGAGTGCCTTGGTGATCTGAT 607 Query 39363 CGCCGACCTGAAAG---GGCTTGTCCAGC---ACGCGGGCCGCGTCCTTCATCGCGTTGC 39416 || ||| ||| |||||| | | | ||||| |||| |||||| || || Sbjct 608 CGGCGATGGCGAAGCCCGGCTTGCCGAACTGGACGCGAGCCGAGTCCTTGATGGCAGCCT 667 Query 39417 GGGCCTTGATCCTGCCGTACGTCGCGATCTGTGCGACCTTGTCGCTGCCGTACTTCTCGG 39476 || |||||| ||||| | || || ||| |||||||||||| |||| |||| || | Sbjct 668 TGGTCTTGATGGTGCCGAAGGTGATGACCTGGGCGACCTTGTCGTTGCCCCACTTGTCCG 727 Query 39477 TGACGTACCGGATCACGTCGCCACGGCGACGGTCATCGAAGTCGATGTCCACGTCGGGCA 39536 | |||| || | || ||||| || || || |||||||||||||| || | ||||||| Sbjct 728 TCGCGTAGCGAACCATCTCGCCGCGACGGCGATCATCGAAGTCGATATCGATATCGGGCA 787 Query 39537 TGGAGACGCGCTCAGGGTTCAGGAACCGCTCGAAGATGAGCCCGTGAGGGATGGGGTCCA 39596 |||| || ||||| ||||| ||||| |||||||| | | ||||| ||||||||||| | Sbjct 788 TGGACACACGCTCGGGGTTGAGGAATCGCTCGAACAGCAACCCGTACGGGATGGGGTCGA 847 Query 39597 GGTCGGTGATCCCGAGGGCGTACGCGGCCAGCGAGCCAGCCGCAGAGCCACGCCCAGGGC 39656 || |||||| || | ||||| || ||| ||| || || || || ||||| || || | Sbjct 848 TGTTGGTGATACCCATCGCGTAGGCCACCAACGAACCGGCAGCCGATCCACGGCCGGGCC 907 Query 39657 CGACCCACACACCGTTCTCCTTCGCCCAGCCGATGAAGTCGGCGACGACGAGGAAGTACG 39716 |||| | | ||| ||||| || | ||| | |||| |||| ||||||||||| | Sbjct 908 CGACACGGATCCCGACGTCCTTGGCGTGGTTGATCAGGTCGCCGACCACGAGGAAGTAGG 967 Query 39717 ACGGGAACCCCATCTGGTTGATCATGTCGATCTCGTAGTCGACCTGCGTTCGGTGCTCGT 39776 |||||| ||||| | |||||| | | |||||||||||||| | | | ||| ||| | Sbjct 968 CCGGGAAGCCCATTTCGTTGATGACGCCGATCTCGTAGTCGGCGCGGGCGAGGTACTCCT 1027 Query 39777 -CGTCGTACCCCTGCGGGAAGCGACGGTCCATGCCGATGAGCACCT--GCTCGC-GGAAG 39832 || || || || ||||||||| || || | ||| | ||||| || ||| ||||| Sbjct 1028 GCGGCGGTCCGCT-CGGGAAGCGGCGATCGAGTCCGCGCATCACCTCGGCGCGCAGGAAG 1086 Query 39833 AACTGGCCCTCCGTCTGGCCTTCGGGCACCGGGAAGCGGGGCATGAGGTTCTGGAACTCG 39892 ||| || ||| || || || || ||||| ||| |||||| ||| |||||| | Sbjct 1087 GTCTG---CTGCGTGTGTCCCTCCGGGACCGGAAAGATCGGCATGCGGTCGTGGAACGCC 1143 Query 39893 AACATGCCG--GT-CGTGTCGACCCGGTCAGCGATCTCCAGCGTGGTG-CGCATCCCCCA 39948 ||| | | || || | || || || |||| | | ||| || ||||| |||| Sbjct 1144 CACACGTCCTCGTACGACTGCACACGCTCGCCGATGGCAACGGTGTTGTCGCATGCCCCC 1203 Query 39949 CG-ACCA-GATGTCGGAGCTGTCGATGGCTGCCATCTCGGCGGCCGACTTCAGGTAGTAC 40006 | ||| | |||| || ||||| ||||||||| || ||||| |||||||| Sbjct 1204 GGTACCTCGTTGTCCCAG------ATGGCGCGCATCTCGGCAGCGGACTTGAGGTAGTAG 1257 Query 40007 CCTTCGCCCTCGAACCGGAAGCGATCCTCCTGGTAGAGGGACGAGCCGGTCTGGACGCAC 40066 || ||||| |||||| ||||||| | | |||| | | ||||||||| | ||| Sbjct 1258 CCGTCGCCGTCGAACTTGAAGCGAGTGGGGTCGGAGAGCGTCTTGCCGGTCTGAATGCAG 1317 Query 40067 AGCAGGGCGTCGTGGGCC---GCAGCCTCCTCGACCCGCGT-GTAGTGCGAGTCGTTGGT 40122 ||||| || ||||| | || || |||| | | | ||| || |||||||||| Sbjct 1318 AGCAGCGCCTCGTGATTCTCGGCGGCGTCCTTG----GTGACGTAATGGCAGTCGTTGGT 1373 Query 40123 GACCACCGGGGTGAGACCGAGGCGCTGACCGAGGCGGTAGAGGTCGTCGCGGACGCGCCG 40182 | | | || | | |||||| ||| |||| | | || | || || || || || Sbjct 1374 GGCAAGTGGCGGAATACCGAGTTGCTTGCCGATGTCGAGCAGACCCTCTCGCACACGGCG 1433 Query 40183 CTCGATCTCCAGGCCGTGGTCCATGATCTCCAGGAAGAAGTTGTCCTTCCCGAAGATCTC 40242 ||||||| || ||||| ||||| | || ||||||||||||||| || ||||||| Sbjct 1434 CTCGATCGAGAGACCGTGATCCATCAGTTCGAGGAAGAAGTTGTCCGGGCCCCAGATCTC 1493 Query 40243 CCGCCACTTCGCAGCCTCGGCGACGGCCTCCTCGTACTGACCGAGGTTGAGCCGGGTCAT 40302 | |||||||||| || | ||| ||||| | |||||||| || |||||| Sbjct 1494 CTGCCACTTCGCGGCAGCTTCGAGAGCCTCGCGATCGTGACCGAGACGAAGGCGGGTCTG 1553 Query 40303 CACAGCACCACCGGGGCATCCCGTGGTGCCGATCAGGCCCTCTGCGTGCTCGGCCACCAG 40362 | |||| ||||| |||||||| |||| | |||||| |||||| |||| | || Sbjct 1554 GATCTCACCGGACGGGCAACCCGTGGTCGCGATGATGCCCTCGGCGTGCGCGGCGATGAG 1613 Query 40363 CTCGGCGTCCATGCGCGGGTACTTCCCGAGCAGACCCTCGCTGTACGAGCGAGAGGAGAG 40422 ||| ||||||| || || | || |||||| | |||||| || ||| | | || || || Sbjct 1614 CTCCTCGTCCATCCGTGGCCATTTACCGAGCTGGCCCTCGATGGACGCGAGCGACGACAG 1673 Query 40423 CTTGAACAGGTTGTGCAGGCCGGTCTTGTTCGTCGCGAGCATGGTCATGTGGGTGTAGGC 40482 |||||| |||||| | || |||||| |||| || | ||| |||||||||||||| || Sbjct 1674 CTTGAAGAGGTTGCGGAGTCCGGTCGCGTTCTCGGCCACCATCGTCATGTGGGTGTACGC 1733 Query 40483 ACCCCGACCGCTCACGTCGTACCGCTTCTGCTCGGGCGTGCCCCACTGGACCCGCTCCTG 40542 ||| | |||| ||||||| |||||| | | |||||| | || |||| Sbjct 1734 ACCGCTACCGGAGACGTCGTCGGACTTCTGGCTGCGATCTCCCCACAGAACTCGCTTGGT 1793 Query 40543 GTCGGAGCGCGAGCCCGGCGCGACGTACGCCTCGATCCCGATGATGGGCTTGACCCCAGC 40602 || | |||| || | || |||| ||| |||||||| |||||||| ||||||| || || Sbjct 1794 GTTGAAGCGAGACTCGGGTGCGATGTAGGCCTCGATGCCGATGATCGGCTTGATGCCGGC 1853 Query 40603 GGCCTGCCCCTGCGTGAAGAAGTCGTACGCACCGTGCAGGTTGCCGTGGTCGGTCAT 40659 | || ||| || |||| | | || |||| || ||| |||||||||||||| Sbjct 1854 GCTCTTTGCCTCGTTGTAGAACTGGCTGGCGCCGTACATGTTTCCGTGGTCGGTCAT 1910 >seq26 Length=69211 Score = 100 bits (110), Expect = 9e-17 Identities = 165/238 (69%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 39514 GAAGTCGATGTCCACGTCGGGCATGGAGACGCGCTCAGGGTTCAGGAACCGCTCGAAGAT 39573 |||||||| ||| | ||||||||| || || || || ||||| ||||| || ||||| | Sbjct 42549 GAAGTCGACGTCGAAGTCGGGCATCGATACCCGTTCCGGGTTAAGGAAACGTTCGAACAG 42490 Query 39574 GAGCCCGTGAGGGATGGGGTCCAGGTCGGTGATCCCGAGGGCGTACGCGGCCAGCGAGCC 39633 || | | | ||||| |||||||||||| | | || || ||||||| || Sbjct 42489 CAGGTCATATTCCAGCGGGTCGAGGTCGGTGATCTTCTGCACATAGGCCACCAGCGACCC 42430 Query 39634 AGCCGCAGAGCCACGCCCAGGGCCGACCCACACACCGTTCTCCTTCGCCCAGCCGATGAA 39693 || | || ||||| || ||||| || ||| ||||| || ||||| ||| || Sbjct 42429 GGCACCCGATCCACGGCCTGGGCCCACTGGCACGCCGTTGCTTTTGGCCCACTGGATAAA 42370 Query 39694 GTCGGCGACGACGAGGAAGTACGACGGGAACCCCATCTGGTTGATCATGTCGATCTCG 39751 ||| |||| |||||||| ||||||||||||||| | || || || | |||| Sbjct 42369 GTCCATTACGATCAGGAAGTAACCGGGGAACCCCATCTGGATAATGATATCCAGCTCG 42312 >seq845 Length=90334 Score = 98.7 bits (108), Expect = 3e-16 Identities = 217/320 (68%), Gaps = 4/320 (1%) Strand=Plus/Minus Query 38362 GGCCGCCATGTACTCGGCCGGGTAGTGCGTCTTCAGGTACGCCGTGCGGTAGGCGATGAG 38421 ||| |||||| | |||||| || ||||| |||| || |||||| |||| | | || Sbjct 49154 GGCGGCCATGAAGGCGGCCGTGTGGTGCGCTTTCAAATAGGCCGTGTGGTACGACAGCAG 49095 Query 38422 TCCGTACGCCGCAGAGTGCGCCTTGTTGAAGGCGTACCCGGCGAAGGGTACGAGCACGTC 38481 |||| || || | ||||| |||||||| |||| |||||||| | | | || ||| Sbjct 49094 GGCGTAGGCGGCGGCGTGCGATTTGTTGAAACCGTAGCCGGCGAACTTTTCCATCAAGTC 49035 Query 38482 CCACACCGCC-CGGATGGCAGCGTCCGAGTAGCC-TCGCTCGCTTGCTCCCTTCTGGAAG 38539 | | | | ||| | || ||| |||| || |||| || || ||||| Sbjct 49034 GAAGATCTCGTCGGCTTTTTCCG-CCGTCAAGCCATCTTTCGCC-GCACCGGCGCGGAAG 48977 Query 38540 TTCACGAACTCCTTGGCCAGCACCTCGGGCTTCTTCTTGCCCATGGCGCGACGGAGAAGG 38599 || || | || ||||| | | |||| |||||| || ||||||||||| || || | | Sbjct 48976 ATCTCGCGGTGCTCGGCCATCTCTTCGGCCTTCTTTTTACCCATGGCGCGGCGCAGCATG 48917 Query 38600 TCGGCCTGACCGAGGGTGTACCCGGCCAGGATCTGCGCCGCCTTCTGCACCTGCTCCTGG 38659 ||||| || || | ||| ||| | | |||||||||| || | |||||||||||| Sbjct 48916 TCGGCGCCGCCCAGCGAGTAGCCGCCGACGATCTGCGCCATCTGCATCACCTGCTCCTGA 48857 Query 38660 TAGATGATGAGCCCGAAGGT 38679 || | |||| ||| |||| Sbjct 48856 TACACCATGATGCCGTAGGT 48837 >seq11514 Length=332 Score = 93.3 bits (102), Expect = 1e-14 Identities = 109/146 (75%), Gaps = 6/146 (4%) Strand=Plus/Plus Query 38270 ACGTCGGGCGGCAGGACCCGAAGGCCCA---TGCGCCTGCACTCGCCGAGGTACGTGGCC 38326 ||||| ||||| || || | ||||| |||| ||| ||| |||| || | || Sbjct 185 ACGTCCGGCGGGAGAACGGTGATGCCCAACTTGCG---GCAGTCGGCGAGATAGATCGCG 241 Query 38327 ATCTTGTTCTTGTCGTCGCCCACCGAGGTGAGCACGGCCGCCATGTACTCGGCCGGGTAG 38386 ||||| ||||||||| || || ||||| |||| ||||||||||||||||||||||| Sbjct 242 GACTTGTCCTTGTCGTCACCGACGGAGGTCAGCAGACCCGCCATGTACTCGGCCGGGTAG 301 Query 38387 TGCGTCTTCAGGTACGCCGTGCGGTA 38412 | || ||| |||||||| || | ||| Sbjct 302 TTCGCCTTGAGGTACGCAGTCCAGTA 327 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160213350585750