Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_028978.1 Length=60609 Score E Sequences producing significant alignments: (Bits) Value seq5362 168 3e-37 seq582 125 3e-24 >seq5362 Length=3136 Score = 168 bits (186), Expect = 3e-37 Identities = 548/839 (65%), Gaps = 38/839 (5%) Strand=Plus/Minus Query 54930 TGCCTTTCGTCTATCCGCATGTGGCGCTGATGCCCGATGCGCATTTCGGCAAGGGCAGC- 54988 ||||||| ||| ||| ||| |||| ||||||| |||||||| |||| ||| ||| Sbjct 903 TGCCTTTTGTCCGTCCACATCTGGCATTGATGCCGGATGCGCACCTCGGTGCGGG-AGCG 845 Query 54989 AGTGTCGGCACGGTGATCCCGACCGAGGGCGCCGTCATTCCCGCCGCGGTGGGTGTCGAT 55048 | || || |||| || ||||| || ||||| |||| ||||||| | || |||||| Sbjct 844 ACGGTGGGTTCGGTCATTCCGACGGAAGGCGCAATCATGCCCGCCG---TCGGAGTCGAT 788 Query 55049 ATTGGCTGCGGCATGATCGCGGCCCGCACCACGTACACGGCGAACGATCTTGAGGGCCTC 55108 || |||||||| |||||||||| | ||| || || || ||| ||| | |||| | Sbjct 787 ATCGGCTGCGGAATGATCGCGGTCAAAACCCAGTTCAACGCACGCGACCTTCAAGGCCGC 728 Query 55109 AAGCTGTCGGATCTGCGGGAGTCGATCGAGTCCGCTATCCCGATGAGCGCCGGGGGATAC 55168 | ||| | || || | ||||| | | | ||| | || || | ||| Sbjct 727 GACCTGAGCGTACTTCGCCACAGCATCGAACGCTCCGTTCCGCTCTCGGCAGGTGTCTAC 668 Query 55169 AACAAGAGCCTGAACCGTTTTGAGTTCACCGGCGCCCGGCTGGACTGGCTGCA--GCTCG 55226 ||||||| |||| | | | | | || | || | ||| | ||| | | Sbjct 667 AACAAGACGCTGAGCGACACGGCGAAAATCCGCATC--GCAGAACTCGAGGCAATGGCGG 610 Query 55227 TCGCTACCCGG---TTCGACGTCGACCTGTCGCACTCCCCGAAGTGGCGGGAGCAGCTCG 55283 || | || | ||| ||| | | | | || || ||| || ||||||| Sbjct 609 GCGATCGCCTGGCCTTCTACGACAAGTTCAAGAAC------AACTGGAGGTTTCAGCTCG 556 Query 55284 GCACGCTGGGCGGCGGCAATCACTTCATCGAGCTGTGCCTCGACCACCTCGACCGGGTGT 55343 | ||||||||| || || |||||||||||| || ||||| | |||| | || | Sbjct 555 GAACGCTGGGCTCTGGTAACCACTTCATCGAGGTGACACTCGATGAAAGCGACGGCGTCT 496 Query 55344 GGTTGTTCCTGCACTCAGGTTCTCGTGGCGTCGGTAACAAGATCGCGCAGAAGCACATTC 55403 || ||||||||||||| || || || |||| |||||| |||||||| | ||||| Sbjct 495 GGCTGTTCCTGCACTCGGGAAGCCGCGGTATCGGAAACAAGCTCGCGCAGCATCACATCA 436 Query 55404 AGGCCGCGCAGGGCTATTGCCTCGCCAACGG-GCTGCAGGTGCCG-CACAA---GGATCT 55458 || ||| ||| || ||| | ||| | | || || | | | |||||| Sbjct 435 AGATCGCCAAGGACTTGTGCG-----AGCGGTGGTACATCAACCTTCCCGATCCGGATCT 381 Query 55459 GGCGTACCTCGTCGAGGGCACGGTCGAGTTCGACCGCTACCTCGTCGAATTGCGCTGGGC 55518 || ||||| |||||| || ||| |||||| ||| || ||| | |||||| Sbjct 380 TGCCTACCTGGTCGAGAAGACACCCGAATTCGACTCGTACATCACCGATCTCAACTGGGC 321 Query 55519 GCAGCGGTTCGCGTACTACAACCGCGCCGAGATGATGGACCGATTCGCGCAGGCGTTCAA 55578 |||| ||||| | |||||||| |||||||||||||| ||| | ||| ||| Sbjct 320 TCAGCACTTCGCTTTGCTCAACCGCGAAGAGATGATGGACCGCGTCGTGAAGGACTTCGC 261 Query 55579 TCATTGGATCGGCGCGCCCGGCTACCCGGCCGA-----GACGATCGTCGAGACCATCAAC 55633 |||| || || | |||| | || || || ||||| |||||| |||||| Sbjct 260 GCATTTCATGGGAGA---CGGCAAGCCCGC-GATCATCGACGAA-GTCGAGCGGATCAAC 206 Query 55634 GCGCACCACAACTACACGCAGAAGGAGCAGCACGGCGGCCGTGATGTGTGGCTGACCCGC 55693 |||||||||| ||| ||||||||| ||| ||| | | ||||||||||| ||| Sbjct 205 TGCCACCACAACTTCACCCAGAAGGAGTTCCACATGGGCAGGGGTGTGTGGCTGAGCCGT 146 Query 55694 AAGGGCGCGATCGACGCGAACGAGGGTGTGCGGGGCCTGATTCCGGGCTCGATGGGCAC 55752 ||||| |||||| | || |||||||| || || || || || || |||||||| || Sbjct 145 AAGGGTGCGATCAAGGCAAACGAGGGCACGCCCGGGCTCATCCCCGGTTCGATGGGGAC 87 >seq582 Length=79996 Score = 125 bits (138), Expect = 3e-24 Identities = 151/203 (74%), Gaps = 2/203 (1%) Strand=Plus/Plus Query 54888 TCGACGACCAGACGCTTGCGCAGGC-GCAGCAGATCGCCGATCTGCCTTTCGTCTATCCG 54946 |||||| ||| |||| |||| || ||| || |||||| ||||| |||| |||||| Sbjct 74505 TCGACGCGCAGGCGCT-GCGCCAGCTGCACCATATCGCCAGCCTGCCCATCGTTTATCCG 74563 Query 54947 CATGTGGCGCTGATGCCCGATGCGCATTTCGGCAAGGGCAGCAGTGTCGGCACGGTGATC 55006 || |||| | |||||||| | |||| ||||| ||| || ||||||| ||||| Sbjct 74564 CACGTGGTGGCCATGCCCGACGTGCATGCCGGCATCGGCGCCACCGTCGGCAGCGTGATT 74623 Query 55007 CCGACCGAGGGCGCCGTCATTCCCGCCGCGGTGGGTGTCGATATTGGCTGCGGCATGATC 55066 || || ||||||||||| || ||||| ||||| ||||| || ||||||||||||| | Sbjct 74624 CCCACGCGCGGCGCCGTCATCCCGGCCGCCGTGGGCGTCGACATCGGCTGCGGCATGAAC 74683 Query 55067 GCGGCCCGCACCACGTACACGGC 55089 || | ||||| || | ||||| Sbjct 74684 GCCGTGCGCACGACCTTGACGGC 74706 Score = 109 bits (120), Expect = 2e-19 Identities = 360/545 (66%), Gaps = 20/545 (4%) Strand=Plus/Plus Query 55282 CGGCACGCTGGGCGGCGGCAATCACTTCATCGAGCTGTGCCTCGACCACCTCGACCGGGT 55341 |||||| |||| ||||||||||||||||| || | ||||||||| | | || || Sbjct 74920 CGGCACCTTGGGGGGCGGCAATCACTTCATTGAAATCTGCCTCGACGAGGAGCAGCGCGT 74979 Query 55342 GTGGTTGTTCCTGCACTCAGGTTCTCGTGGCGTCGGTAACAAGATCGCGCAGAAGCACAT 55401 |||| | | ||||| || || || || ||| |||| ||| |||| | | ||| Sbjct 74980 GTGGGTCATGCTGCATTCGGGCTCGCGCGGCATCGGCAACGCCATCGGTCGTTACTTCAT 75039 Query 55402 TCAGGCCGCGCAG--GGCTATTGCCTCGCCAACGGGCTGCAGGTGCCGCACAAGGATCTG 55459 ||||||||| || | ||| |||| || ||||||| ||||| || ||| ||| Sbjct 75040 CGCCGCCGCGCAGAAGGACA-TGCGGCGCC-ACCAGCTGCAGCTGCCGGACGCGGACCTG 75097 Query 55460 GCGTACCTCGTCGAGGGCACGGTCGAGTTCGACCGCTACCTCGTCGAATTGCGCTGGGCG 55519 ||||| || ||| ||| | | | ||||||| |||| | | | || ||||||| Sbjct 75098 GCGTATCTGAGCGAAGGCTCCGCGGTGTTCGACGACTACGTGGAGGCGGTGGACTGGGCG 75157 Query 55520 CAGCGGTTCGCG-TACTACAACCGCGCCGAGATGATGGACCGATTCGCGCAGGCGTTCAA 55578 ||| | |||| | || |||||||| |||||||||| ||| | || | | ||| | Sbjct 75158 CAGGATTACGCGCTGCT-CAACCGCGGCGAGATGATGCGCCGCGT-GCTC-GACGTGCTG 75214 Query 55579 TCATTGGATCGGCGCGCCCGGCTACCCGGCCGAGACGATCGTCGAGACCATCAACGCGCA 55638 | || |||| ||| | ||||| ||| || || |||||||| || Sbjct 75215 GC----GAAGTTCGCG-CCGCCGTTCCGGC----TCGA-CGGGGAAGCCATCAACTGCCA 75264 Query 55639 CCACAACTACA-CGCAGAAGGAGCAGCACGGCGGCCGTGATGTGTGGCTGACCCGCAAGG 55697 ||||||||||| ||| | || ||||||| | |||| | | |||| ||||||| Sbjct 75265 CCACAACTACATCGC-GCGCGAAACGCACGGCAACGATGATTTATATGTGACGCGCAAGG 75323 Query 55698 GCGCGATCGACGCGAACGAGGGTGTGCGGGGCCTGATTCCGGGCTCGATGGGCACCTGTT 55757 |||| ||| ||| |||| | || |||| | || || ||| |||||| | | Sbjct 75324 GCGCCATCTCGGCGCGGCAGGGGGAGCTGGGCATCATCCCCGGCAGCATGGGCGCGCGCA 75383 Query 55758 CGTATGTCGTGACCGGCAAGGGTAATCCCGAGGCGTTGTGCTCAGCGCCGCACGGTGCGG 55817 | ||||| |||||||| || || || |||| ||||| ||||||| |||| Sbjct 75384 GCTTCATCGTGCGTGGCAAGGGCAAGCCGGAATCGTTCTGCTCCTGCTCGCACGGGGCGG 75443 Query 55818 GCCGC 55822 | ||| Sbjct 75444 GGCGC 75448 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 193794964719510