Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_028999.1 Length=309208 Score E Sequences producing significant alignments: (Bits) Value seq316 98.7 2e-15 seq58 84.2 4e-11 >seq316 Length=46273 Score = 98.7 bits (108), Expect = 2e-15 Identities = 70/79 (89%), Gaps = 1/79 (1%) Strand=Plus/Minus Query 294859 TATGGTGCCGTCAGAGGGATTCGAACCCGTCGACCTACTGATTACAAGTCAGTTGCTCTA 294918 |||||||||| || ||| ||||||||| ||||||||||||||||||||||||||||| Sbjct 32410 TATGGTGCCGGCACCAGGAGTCGAACCCGG-GACCTACTGATTACAAGTCAGTTGCTCTA 32352 Query 294919 CCAGCTGAGCTATAACGGC 294937 ||| |||||||||| |||| Sbjct 32351 CCAACTGAGCTATACCGGC 32333 >seq58 Length=338205 Score = 84.2 bits (92), Expect = 4e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 1031 ATCCCATGGCACATCCCCGAAGACTTCAAATGGTTCAAAGAGAAAACCTTGGGCCATCCA 1090 || || ||||| | || | || ||||||| ||||| | | ||||||||| | || Sbjct 67498 ATGCCCTGGCATTTGCCGGGGGATTTCAAATATTTCAAGGCCACTACCTTGGGCAAGCCG 67439 Query 1091 GTGATCATGGGTCGTAAGACCTGGGAATCCATTGGTCGTCCTTTGCCGGGTCGTCTGAAT 1150 | |||||||| || ||||||||||| ||| | || || || |||||||| || |||| Sbjct 67438 ATCATCATGGGGCGCAAGACCTGGGATTCCCTGGGGCGACCGTTGCCGGGCCGGTTGAAC 67379 Query 1151 ATCGTGGTCAG 1161 || |||||||| Sbjct 67378 ATTGTGGTCAG 67368 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989156874762765