Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_029015.2 Length=33509 Score E Sequences producing significant alignments: (Bits) Value seq367 129 1e-25 seq1599 87.8 4e-13 >seq367 Length=135625 Score = 129 bits (142), Expect = 1e-25 Identities = 321/482 (67%), Gaps = 8/482 (2%) Strand=Plus/Plus Query 282 CCCAGCCAGTCGTTTAACTCTTTCAGGCTTTCTTGTATCGGGGCCAGTTCGTTGATGGAA 341 |||||||| ||||| | || ||| || | || | ||| |||| ||||||| | Sbjct 44970 CCCAGCCACTCGTTGACCTGGGCCAGCCTCGCCTGCAACGGCTCCAGCTCGTTGACCGCC 45029 Query 342 AACACCTTCGCCGCTTTCT-CTACGTCGCCGAAGCCACCGGAGTTATTCGGCATTACCCC 400 | |||| || || | | | ||| | || || || || | ||| | ||||| | || Sbjct 45030 CAAACCTCAGCAGCCTCCCGCAACGAC-CCAAAACCGCCCGCGTTCTGCGGCACGATGCC 45088 Query 401 CATCAGAACGGGCGGCACACGGTGCGCGGCTAACAGGTCGTCGCGGGTGGCGTCTTTGAT 460 ||||| || || | || ||| || | ||| ||||| ||| || || |||||| Sbjct 45089 CATCAACTGCGGTGGAATGCGCAACGCCGCGAGCAGATCGTCACGGCTGATGTTTTTGAT 45148 Query 461 GCCGGTAAACTCATCCTTCGCCGCCACCTGGCTGAACGGCATAATTTGCAGGCCGTCTTT 520 | | || || ||||| ||||| |||| ||| | ||| || | || | ||||||||| Sbjct 45149 CGAGCTGAATTCGTCCTTGGCCGCAACCTCGCTCACCGGGATGAGCTGAATGCCGTCTTT 45208 Query 521 TTTCCCGCCCGCCGCGTAGACAAACAGGTTTTTAAAAGCACCGTTGCC---GCGAGCATC 577 || || ||| |||||| ||||||||| || |||| | | ||| |||| | Sbjct 45209 CTTGCCTGCCGGCGCGTACACAAACAGG-TTGCGAAAGTTGCCTGGCCCTTTCGAG--TT 45265 Query 578 TTTCAGCGACTTTTTAAGCTTTTCCACATCGTTATTATTCGCCACCGGGTCAGTGAGGTA 637 ||||| | | || || | || | | ||| | ||| ||| || | ||| Sbjct 45266 CTTCAGTGCGGTGCGCAGTGAGTCGATGTCCTCTTCCTTCTGCGCCGCGTCGGTCATGTA 45325 Query 638 GACGATCACACCCGCATGACTGCCGTTAATGTAGTAGTTGCGGCGGAACACCGTTGCTTC 697 | || | ||| ||||| |||||||| ||||||| ||||| ||||||| ||| || Sbjct 45326 CAGAATGAAACCGGCATGGCTGCCGTTGTTGTAGTACTTGCGCCGGAACAGCGTGGCGCT 45385 Query 698 ACCGTTCAGCATGGCGCTTTGTAGCGCGGCCAGATATTCCGGCGCGCCGTAGATCTCCTG 757 |||| |||| |||||||| ||||| ||||| | |||||| ||||||||| ||||| Sbjct 45386 CTCGTTGAGCAGTGCGCTTTGCAGCGCTGCCAGCCACTCCGGCAGGCCGTAGATTTCCTG 45445 Query 758 GT 759 || Sbjct 45446 GT 45447 >seq1599 Length=1184 Score = 87.8 bits (96), Expect = 4e-13 Identities = 230/351 (66%), Gaps = 0/351 (0%) Strand=Plus/Minus Query 14553 CGTGGAGTCTGCATGAGGACCACCGTGGCGAGACGGTTTACGACACAACAACCGGCAATC 14612 ||||| ||| ||| ||||| || || | |||||||| ||| | ||||| | Sbjct 1162 CGTGGCATCTCGTTGAAGACCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCGACG 1103 Query 14613 AGGTTTATATCTCCGCTCCCGGCCCGCTACCTGAAAACGTCACATCAGTTTCACCTGATG 14672 | | | ||| || | | ||| ||| |||| ||||| || || | | || || | | Sbjct 1102 CGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTGTCGCCGGGAG 1043 Query 14673 GTGAATATCAGAAATGGGATGGTAAGACGTGGGTAAAAGACGAAGCGGCTGAAACAGCGA 14732 | ||||||||||| ||| | || | | ||||| || || | || |||| | | Sbjct 1042 GGGAATATCAGAAGTGGAACGGCACAGCCTGGGTGAAGGATACGGAAGCAGAAAAACTGT 983 Query 14733 CCAGACTTCGTGAAGCTGAAGGAACCAAAAGCCGTCTTTTGCAAACAGCAGCGGAGAAAA 14792 | | | || || || |||| ||| |||| | | || |||| ||| ||| | | Sbjct 982 TCCGGATCCGGGAGGCAGAAGAAACAAAAAACAGCCTGATGCAGGTAGCCAGTGAGCATA 923 Query 14793 TCGCGCCGTTACAGGATGCTGTTGATCTTGGAATCGCAACAGATGATGAGAAAGCGCAAC 14852 | ||||| | ||||||||||| ||||| | ||||||||| || || || | || | Sbjct 922 TTGCGCCACTTCAGGATGCTGTAGATCTGGAAATCGCAACGGAGGAAGAAATCTCGTTGC 863 Query 14853 TCGACGAGTGGAAAAAATACAGGGTGTTGGTAAACCGGGTGGATACATCAA 14903 | || | ||||| || || |||||||| | ||||| || ||||| ||| Sbjct 862 TGGAAGCCTGGAAGAAGTATCGGGTGTTGCTGAACCGTGTTAATACAACAA 812 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 107089387068510