Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_029093.1 Length=75796 Score E Sequences producing significant alignments: (Bits) Value seq1143 282 2e-71 seq211 269 1e-67 seq7489 255 3e-63 seq4107 100 1e-16 seq1862 91.5 7e-14 seq1863 82.4 4e-11 >seq1143 Length=31399 Score = 282 bits (312), Expect = 2e-71 Identities = 554/806 (69%), Gaps = 25/806 (3%) Strand=Plus/Plus Query 65760 ACCGGCTCTATCGCTCTGGACGGCGCTCTGGGCATCGGGGGGTACCCGAGGGGCCGGGTG 65819 ||||| || ||| ||||| ||| |||||| | || || | ||| | ||||| ||| Sbjct 23731 ACCGGTTCGCTCGGCCTGGATATCGCGCTGGGCGTGGGCGGCTTGCCGCGCGGCCGCGTG 23790 Query 65820 GTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTGTGTCTCCACGCGGTGGCC 65879 |||||||||||||| || ||||| || || || | || ||| || || | | || Sbjct 23791 GTGGAAATCTACGGTCCGGAATCGTCGGGTAAAACCACCCTGACCCTGCAAACCATTGCT 23850 Query 65880 AATGCGCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCTGAGCACTCCCTGGACCCT 65939 | ||| || || || | | ||||| ||||| || |||||| | || ||| Sbjct 23851 GAAATGCAAAAACTGGGCGGTACCTGCGCCTTTATCGATGCCGAGCACGCGCTCGACGTC 23910 Query 65940 GAGTACGCCAAGGCGCTCGGTGTGGACCTCGACAACCTCGTGGTGGTTCAGCCGGACACT 65999 | ||||| | ||| || ||| |||| | | | || | |||||||| || Sbjct 23911 GGCTACGCGCAAAAGCTGGGCGTGAACCTGCATGAATTGCTGATTTCGCAGCCGGATACG 23970 Query 66000 GGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGCGAGCTGTCCA--TCG 66057 ||||||||||| ||||| ||| ||| |||||| ||| ||| ||| ||| | ||| Sbjct 23971 GGCGAGCAGGCGCTGGAAATCTGCGACGCCCTCGTGCGGTCGGGC-AGC-GTCGACCTCG 24028 Query 66058 TCGTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAAGGCGACATCGGGG 66117 | ||| | ||||| ||||| || ||| ||| ||||||||| ||||||||||||| || | Sbjct 24029 TTGTCATCGACTCCGTGGCCGCACTGACGCCACGCGCCGAGATCGAAGGCGACATGGGTG 24088 Query 66118 ACAGTCACGTC--GGCCTGCACGCGCGCCTCATGTCGCAGGCCATGCGCAAGCTCACCGG 66175 | || | | |||||||| |||||||| |||||||| || |||||||||| ||||| Sbjct 24089 AT--TCCCTGCCGGGCCTGCAAGCGCGCCTGATGTCGCAAGCGCTGCGCAAGCTGACCGG 24146 Query 66176 CACCATCTCCAGCACCAACACGCTGACGCTCTGGGTCAACCAGTTGCGCGAGAAGATCGG 66235 ||||| | |||| || || ||| ||| |||||||| | ||| ||||||||| Sbjct 24147 TTCCATCAACCGCACGAATACCCTGGTCATCTTCATCAACCAGATCCGCATGAAGATCGG 24206 Query 66236 CAACGTGGGCTACGGCCCGAACGAGACCACCACGGGCGGCAAGGCTTTGAGGTTCTACGC 66295 | || | | ||||| || |||||||| |||||||| || ||| |||||||| Sbjct 24207 CGTGATGTTCGGCAGCCCG---GAAACCACCACCGGCGGCAATGCCCTGAAATTCTACGC 24263 Query 66296 CTCAGTCCGCATGGATGTCCGTCGCATCGCCACCGAGAAGGAAGGCGATGAGGCTGTCGG 66355 || || ||| |||| |||| |||| || | | ||| |||||||| | |||| Sbjct 24264 GTCCGTGCGCCTGGACATCCGCCGCACCGGCTCGATCAAGTCCGGCGATGAAGTGATCGG 24323 Query 66356 CAACCGCACCCGGGTGAAGGTCGTCAAGAACAAGCTGGCCCCGCCG--CACCGCAACGCC 66413 |||| ||| ||| |||||||||||||||||| | || || ||| || | | ||| Sbjct 24324 CAACGAAACCAAGGTCAAGGTCGTCAAGAACAAGATCGCGCCACCGTTCAAGGAAGCGC- 24382 Query 66414 GAGTTCTCCGTCGTGTACGGGGAGGGCATCTCGCGTGAGGTCGAACTCCTCGACCTGGCC 66473 | ||| | || ||||||| | |||| ||||| || | |||| |||| ||||||| Sbjct 24383 -ACTTCGACATCCTGTACGGCGCCGGCACGTCGCGCGAAGGCGAAATCCTGGACCTGG-- 24439 Query 66474 GTGTCGCAGGGC---CTGGTGAAGAAGTCGGGCGCCTGGTTCAAGTACGGGGACAAGAAC 66530 || ||| | | | | ||| |||| || || | |||| || ||| | | |||| Sbjct 24440 GT-TCGGACGCCAAGATCGTGGAGAAATCCGGTTCGTGGTACAGCTACAACGGC--GAAC 24496 Query 66531 G--TCGCCCAGGGCAAGCCCAAGGCC 66554 | ||| |||||||||| ||| ||| Sbjct 24497 GCATCGGCCAGGGCAAGGACAACGCC 24522 >seq211 Length=76543 Score = 269 bits (298), Expect = 1e-67 Identities = 541/798 (68%), Gaps = 13/798 (2%) Strand=Plus/Plus Query 65758 CCACCGGCTCTATCGCTCTGGACGGCGCTCTGGGCATCGGGGGGTACCCGAGGGGCCGGG 65817 |||| |||||| | | ||||||| ||| || ||||| || || || | ||||| Sbjct 35751 CCACTGGCTCTCTGGGTCTGGACATCGCGCTCGGCATTGGCGGCCTGCCAAAAGGCCGTA 35810 Query 65818 TGGTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTGTGTCTCCACGCGGTGG 65877 | || || |||||||| || |||||||| || || | || ||| || | | | | Sbjct 35811 TCGTTGAGATCTACGGTCCTGAATCTTCCGGTAAAACCACCCTGACCCTGTCGGTGATTG 35870 Query 65878 CCAATGCGCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCTGAGCACTCCCTGGACC 65937 || | || || || || | || | || | | |||| || |||||| ||||||| | Sbjct 35871 CCCAGGCACAAAAAATGGGCGCCACCTGTGCGTTCGTCGATGCCGAGCACGCCCTGGATC 35930 Query 65938 CTGAGTACGCCAAGGC--GCTCGGTGTGGACCTCGACAACCTCGTGGTGGTTCAGCCGGA 65995 |||| |||||| ||| ||| || || || | ||| |||| |||| || ||||| Sbjct 35931 CTGAATACGCC--GGCAAGCTGGGCGTCAACGTTGACGACCTGCTGGTTTCGCAACCGGA 35988 Query 65996 CACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGCGAGCTGTCCAT 66055 ||| || ||||| || ||||| ||| ||| | || || || || | | | Sbjct 35989 CACCGGTGAGCAAGCGCTGGAAATCACCGACATGCTGGTGCGCTCCAACGCCATCGACGT 36048 Query 66056 CGTCGTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAAGGCGACATCGG 66115 |||| || ||||| ||||| |||||||| || || || |||||||||| || || Sbjct 36049 GATCGTGGTCGACTCCGTGGCAGCCCTGGTACCCAAGGCTGAAATCGAAGGCGAAATGGG 36108 Query 66116 GGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCATGCGCAAGCTCACCGG 66175 |||| ||||| ||||| || || ||| | ||||| |||||| |||| || ||||||| Sbjct 36109 CGACATGCACGTGGGCCTTCAAGCCCGCTTGATGTCCCAGGCCCTGCGTAAAATCACCGG 36168 Query 66176 CACCATCTCCAGCACCAACACGCTGACGCTCTGGGTCAACCAGTTGCGCGAGAAGATCGG 66235 | |||| | | ||||| || | ||| |||||||| | || ||||||||| Sbjct 36169 TAACATCAAGAACGCCAACTGCTTGGTGATCTTCATCAACCAGATCCGGATGAAGATCGG 36228 Query 66236 CAACGTGGGCTACGGCCCGAACGAGACCACCACGGGCGGCAAGGCTTTGAGGTTCTACGC 66295 | || | | ||||| || |||||||| || || || || ||| ||||||||| Sbjct 36229 CGTGATGTTCGGCAGCCCG---GAAACCACCACCGGTGGTAACGCGCTGAAGTTCTACGC 36285 Query 66296 CTCAGTCCGCATGGATGTCCGTCGCATCGCCACCGAGAAGGAAGGCGATGAGGCTGTCGG 66355 || ||||| |||| ||||||| | | | | | ||||||||| || |||| ||| || Sbjct 36286 TTCGGTCCGTCTGGACATCCGTCGTACTGGCGCGGTGAAGGAAGGTGACGAGGTTGTTGG 36345 Query 66356 CAACCGCACCCGGGTGAAGGTCGTCAAGAACAAGCTGGCCCCGCCGCACCGCAACGCCGA 66415 | | ||||| || || ||||| ||||||||| ||||||||||| ||| | ||||| Sbjct 36346 TAGCGAAACCCGCGTTAAAGTCGTGAAGAACAAGGTGGCCCCGCCGTTCCGTCAGGCCGA 36405 Query 66416 GTTCTCCGTCGTGTACGGGGAGGGCATCTCGCGTGAGGTCGAACTCCTCGACCTGGCCGT 66475 |||| | | ||||| |||| |||| | | | ||| | ||||||||| ||| Sbjct 36406 GTTCCAGATTCTCTACGGCAAGGGTATCTACCTGAACGGCGAGATGATCGACCTGGGCGT 36465 Query 66476 GTCGCAGGGCCTGGTGAAGAAGTCGGGCGCCTGGT---TCAAGTACGGGGACAAGAACGT 66532 | ||| || | || |||| || || ||||||| | | |||| ||||| | Sbjct 36466 GCTGCACGGTTTCGTCGAGAAATCCGGTGCCTGGTATGCCTACAACGGCAGCAAGA---T 36522 Query 66533 CGCCCAGGGCAAGCCCAA 66550 || |||||||||| |||| Sbjct 36523 CGGCCAGGGCAAGGCCAA 36540 >seq7489 Length=570 Score = 255 bits (282), Expect = 3e-63 Identities = 395/560 (71%), Gaps = 13/560 (2%) Strand=Plus/Plus Query 65865 CTCCACGCGGTGGCCAATGCGCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCTGAG 65924 || ||||| || |||||||| ||| ||| |||| ||| || | ||||||||| ||| Sbjct 11 CTGCACGCAGTTGCCAATGCTCAGGCCAACGGCGGCATCGCGGCGTTCATCGACGCGGAG 70 Query 65925 CACTCCCTGGACCCTGAGTACGCCAAGGC--GCTCGGTGTGGACCTCGACAACCTCGTGG 65982 ||| | || || || || || || || | ||| || || || ||| ||| ||| Sbjct 71 CACGCACTCGATCCCGACTATGC--AGCCAAGCTGGGCGTCGATACCGATGCACTCCTGG 128 Query 65983 TGGTTCAGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTG 66042 | ||||||||||| || ||||||||||| || ||| ||| | || || || | Sbjct 129 TCTCGCAGCCGGACACGGGTGAGCAGGCCCTCGAAATCACCGACATGCTGATCCGTTCAG 188 Query 66043 GCGAGCTGTCCATCGTCGTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCG 66102 ||| || ||||||||| | ||||| ||||| || || || || ||||||||| ||| Sbjct 189 GCGCCCTCGACATCGTCGTGATCGACTCCGTGGCCGCTCTTGTTCCTCGCGCCGAGATCG 248 Query 66103 AAGGCGACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCATGC 66162 ||||||| || || ||||| |||||||| |||| || || || ||| ||||| ||| Sbjct 249 AAGGCGAGATGGGTGACAGCCACGTCGGTTTGCAGGCTCGACTGATGAGCCAGGCGCTGC 308 Query 66163 GCAAGCTCACCGGCACCATCTCCAGCAC---CAACACGCTGACGCTCTGGGTCAACCAGT 66219 ||||| ||||||| |||| || | | || ||| | | ||| |||||||| Sbjct 309 GCAAGATCACCGGTGCCATGAACAACTCGGGCACCACCGTCA---TCTTCATCAACCAGC 365 Query 66220 TGCGCGAGAAGATCGGCAACGTGGGCTACGGCCCGAACGAGACCACCACGGGCGGCAAGG 66279 | |||||||||||||| ||| | ||| | ||| |||||||| || || |||| Sbjct 366 TTCGCGAGAAGATCGG---TGTGATGTTCGGTTCTCCCGAAACCACCACCGGTGGTAAGG 422 Query 66280 CTTTGAGGTTCTACGCCTCAGTCCGCATGGATGTCCGTCGCATCGCCACCGAGAAGGAAG 66339 | ||| ||||||||| || |||||| | || ||||||| |||| || ||||| | Sbjct 423 CACTGAAGTTCTACGCTTCGGTCCGCCTCGACATCCGTCGTATCGAAACTCTCAAGGACG 482 Query 66340 GCGATGAGGCTGTCGGCAACCGCACCCGGGTGAAGGTCGTCAAGAACAAGCTGGCCCCGC 66399 | || || || || |||||||| || || |||||||||||||||||| | || |||| Sbjct 483 GTACCGACGCAGTGGGTAACCGCACTCGCGTCAAGGTCGTCAAGAACAAGGTCGCGCCGC 542 Query 66400 CGCACCGCAACGCCGAGTTC 66419 || | | ||||||||| Sbjct 543 CGTTCAAGCAGGCCGAGTTC 562 >seq4107 Length=847 Score = 100 bits (110), Expect = 1e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 66258 GAGACCACCACGGGCGGCAAGGCTTTGAGGTTCTACGCCTCAGTCCGCATGGATGTCCGT 66317 || ||||| ||||||||||| || ||| ||||| || || || || | ||| |||| Sbjct 30 GAAACCACGACGGGCGGCAATGCGCTGAAATTCTATGCTTCGGTGCGTCTCGATATCCGC 89 Query 66318 CGCATCGCCACCGAGAAGGAAGGCGATGAGGCTGTCGGCAACCGCACCCGGGTGAAGGTC 66377 ||||||| | ||||||| | || |||| |||||||||| ||||| || ||||| Sbjct 90 CGCATCGGTGCGCTGAAGGAACGTGACGAGGTGGTCGGCAACCAGACCCGCGTCAAGGTG 149 Query 66378 GTCAAGAACAAGCTGGCCCCGCC 66400 |||||||||||||| || || || Sbjct 150 GTCAAGAACAAGCTTGCGCCCCC 172 >seq1862 Length=5913 Score = 91.5 bits (100), Expect = 7e-14 Identities = 134/188 (71%), Gaps = 4/188 (2%) Strand=Plus/Plus Query 59258 GACGGCGACGCCACATTCCTCCGCTGCACCATCTGGCGCGACGCCGCCGAGAACGTAGCG 59317 |||||||| || ||| | || |||| |||||||||||| || ||||||||||| ||| Sbjct 5330 GACGGCGATGCGCTGTTCATGCGTTGCAACATCTGGCGCGAAGCAGCCGAGAACGTCGCG 5389 Query 59318 GAAAGCCT--CCAGAAAGGCCAGCGCGTCATCGTGCATGGCTACCTCAAGCAGCGCTCCT 59375 || ||| | || | || || || |||||| ||| ||||||||||| || | Sbjct 5390 GAGAGCTTGACCCG--TGGTTCACGAGTAATCGTGAGCGGCCGGCTCAAGCAGCGTTCGT 5447 Query 59376 TCGAGACCAAGGAAGGCGACAAGCGCACCGTCATCGAGGTGGAGGTAGACGAGATCGGCC 59435 ||| || || ||||| ||||| || ||| ||||| | || || || || ||||| | Sbjct 5448 ACGAAACTCGCGAGGGCGAAAAGCGAACTGTCGTCGAGCTCGAAGTCGATGAAATCGGTC 5507 Query 59436 CGTCGCTG 59443 | || ||| Sbjct 5508 CTTCACTG 5515 >seq1863 Length=4856 Score = 82.4 bits (90), Expect = 4e-11 Identities = 142/202 (70%), Gaps = 6/202 (3%) Strand=Plus/Minus Query 49097 CAACCACCCCAGGACCTAGCCGCCGAGTCAG-CAGTCCTCGGCGCCATGCTTCTCTCCAA 49155 || ||||| |||||| | | |||||| ||| | || ||||||| |||||| || ||| Sbjct 3709 CAGCCACCTCAGGACATGACTGCCGAG-CAGTCGGTGCTCGGCGGCATGCTGCTGAGCAA 3651 Query 49156 GAACGCCACCCCGGCCGTCATGGAGATTCTCAAGCCCGAGGACTTCTACCGCCCCAACCA 49215 | |||||| | | | |||| | ||| | || || | ||||||||||| ||| || Sbjct 3650 GGACGCCATCGCTGACGTCCTCGAGGTACTGCGTCCGGGTGACTTCTACCGGCCCGCTCA 3591 Query 49216 CGCCACCGTCTACCAGATCATCACCGACCTCTACATGGCC--GGTGAGTCCGCCGACGTC 49273 | |||||||| | | ||| |||||||||| ||| || ||| |||||||| Sbjct 3590 CCAGTCCGTCTACGACGTGATCCTGGACCTCTACA--GCCGTGGCGAGCCCGCCGACCCG 3533 Query 49274 ATCACCGTCGCCGCGGAGCTCG 49295 | || ||| |||| ||||||| Sbjct 3532 GTGACGGTCTCCGCCGAGCTCG 3511 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 242381021905385