Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_029121.1 Length=151417 Score E Sequences producing significant alignments: (Bits) Value seq1156 91.5 1e-13 seq316 82.4 7e-11 >seq1156 Length=71941 Score = 91.5 bits (100), Expect = 1e-13 Identities = 61/68 (90%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 110991 GGATTCGAACCTCCGACACAGGGATTTTCAGCCCCCTGCTCTACCGACTGAGCTACCAGT 111050 ||| ||||||| |||||||| ||||||||| || |||||||||||||||||||||||| Sbjct 43277 GGAATCGAACCACCGACACAAGGATTTTCAATCCTCTGCTCTACCGACTGAGCTACCAGG 43336 Query 111051 CCAAGGCG 111058 |||||||| Sbjct 43337 CCAAGGCG 43344 Score = 87.8 bits (96), Expect = 2e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 110991 GGATTCGAACCTCCGACACAGGGATTTTCAGCCCCCTGCTCTACCGACTGAGCTACCAGT 111050 ||| ||||||| |||||||| ||||||||| || |||||||||||||||||||||||| Sbjct 48766 GGAATCGAACCACCGACACAAGGATTTTCAATCCTCTGCTCTACCGACTGAGCTACCAGG 48825 Query 111051 CCAAGG 111056 |||||| Sbjct 48826 CCAAGG 48831 >seq316 Length=46273 Score = 82.4 bits (90), Expect = 7e-11 Identities = 54/60 (90%), Gaps = 0/60 (0%) Strand=Plus/Minus Query 110986 GAGAAGGATTCGAACCTCCGACACAGGGATTTTCAGCCCCCTGCTCTACCGACTGAGCTA 111045 |||| ||| ||||||| ||||||| |||||||||| ||||||||||||||||||||||| Sbjct 3945 GAGACGGAATCGAACCGCCGACACGGGGATTTTCAATCCCCTGCTCTACCGACTGAGCTA 3886 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 484321598604600