Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq6140 96.9 3e-15 seq7603 95.1 1e-14 >seq6140 Length=1248 Score = 96.9 bits (106), Expect = 3e-15 Identities = 155/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 6546 GCTCGATGTGGTTCAGGTAGATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAA 6605 |||||| ||||| |||| ||||||||| |||| ||| || || | || || || Sbjct 371 GCTCGAAATGGTTGGCATAGAGATGCGCATCGCCCAGCGTGTGAACGAAATCACCCGGCT 430 Query 6606 CCAACCCCACGACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACG 6665 || ||| ||| || || | |||| || ||||| || || || || ||||||| Sbjct 431 GCAGACCCGTGACCTGCGCCACCATGAGGGTCAGCAGGGCATAGGATGCGATATTGAACG 490 Query 6666 GCACCCCTAACCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCG 6725 |||| || | || || | || || || |||||||||||||| |||| || | | Sbjct 491 GCACGCCGAGAAAGATATCGGCGGAGCGCTGGTAGAGCTGGCAGGAAAGCTTTCCGTCGG 550 Query 6726 CGACGTAGAATTGGCAGAGGGTGTGGCACGGGGGGAGCGCCAT 6768 | |||||||| ||| | ||| |||||| || || |||||||| Sbjct 551 CCACGTAGAACTGGAACAGGCAGTGGCAGGGCGGCAGCGCCAT 593 Score = 96.9 bits (106), Expect = 3e-15 Identities = 155/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 34577 ATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGGGAGCTGTCC 34636 |||||||| || || |||||| ||| | ||| |||||||| || | || |||| ||| Sbjct 593 ATGGCGCTGCCGCCCTGCCACTGCCTGTTCCAGTTCTACGTGGCCGACGGAAAGCTTTCC 534 Query 34637 TGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAGT 34696 ||||||||||| || || || | || || | || ||||||||||| || || Sbjct 533 TGCCAGCTCTACCAGCGCTCCGCCGATATCTTTCTCGGCGTGCCGTTCAATATCGCATCC 474 Query 34697 TACGCTCTGCTCACGTACATGATCGCTCATGTCGTGGGGTTGGTTCCTGGGGAGCTGGTG 34756 || || ||||| || |||| | || || ||| ||| || || || || | || Sbjct 473 TATGCCCTGCTGACCCTCATGGTGGCGCAGGTCACGGGTCTGCAGCCGGGTGATTTCGTT 414 Query 34757 CATACGTTGGGGGATGCGCATATCTACCTGAACCACATCGAGC 34799 || ||| |||| ||||||||| |||| ||||| |||||| Sbjct 413 CACACGCTGGGCGATGCGCATCTCTATGCCAACCATTTCGAGC 371 >seq7603 Length=749 Score = 95.1 bits (104), Expect = 1e-14 Identities = 111/150 (74%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 34576 GATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGGGAGCTGTC 34635 |||||| || | ||||||||| | ||| ||| ||||||||||| | || |||| || Sbjct 473 GATGGCCCTGGCGCCGTGCCACGCTTTCTTCCAGTTCTACGTCGCCGACGGCAAGCTCTC 532 Query 34636 CTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAG 34695 ||||||||| || || || | |||||| | || || ||||||||||| || || Sbjct 533 CTGCCAGCTGTACCAGCGCAGCGCCGACATGTTCCTCGGCGTTCCGTTCAACATCGCCAG 592 Query 34696 TTACGCTCTGCTCACGTACATGATCGCTCA 34725 ||||| |||||||| ||||||| || || Sbjct 593 CTACGCGCTGCTCACCCACATGATGGCCCA 622 Score = 95.1 bits (104), Expect = 1e-14 Identities = 111/150 (74%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 6620 TGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCC 6679 || || ||||||| |||||||| ||||| || || ||||||||||| || || | | Sbjct 622 TGGGCCATCATGTGGGTGAGCAGCGCGTAGCTGGCGATGTTGAACGGAACGCCGAGGAAC 563 Query 6680 ATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGG 6739 ||||| | || || || ||||||||||| |||| || | ||||||||||| ||| Sbjct 562 ATGTCGGCGCTGCGCTGGTACAGCTGGCAGGAGAGCTTGCCGTCGGCGACGTAGAACTGG 503 Query 6740 CAGAGGGTGTGGCACGGGGGGAGCGCCATC 6769 ||| | ||||||||| | || |||||| Sbjct 502 AAGAAAGCGTGGCACGGCGCCAGGGCCATC 473 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448183926063600