Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq456 91.5 1e-13 seq1674 89.7 4e-13 seq593 84.2 2e-11 >seq456 Length=67341 Score = 91.5 bits (100), Expect = 1e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 27904 GAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGAT 27963 || |||||||| || || ||||||||||| |||||||| |||| || | | | || ||| Sbjct 21468 GATCAGCAACGTTTGATCTTTGCCGGAAAGCAATTGGAGGACGGTCGTACCCTTTCGGAT 21409 Query 27964 TACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||||||||| ||| ||| | || |||||| | ||| | ||||| || Sbjct 21408 TACAACATCCAAAAGGAGTCTACTCTCCACTTGGTTCTCCGTCTTCGTGGAGG 21356 >seq1674 Length=6646 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 ||||| ||||| | || || || ||||| | ||||| |||||||| ||| | || Sbjct 16 GACAAGGAAGGAATCCCCCCCGATCAACAACGTCTTATTTTCGCCGGAAAGCAACTCGAG 75 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 |||| ||| | | | || ||||||||||||||||| ||| |||| | ||||||||| | Sbjct 76 GACGGACGTACCCTTTCGGATTACAACATCCAAAAGGAGTCCACTCTCCATTTGGTTCTC 135 Query 28003 CGTTTGCGTGGCGG 28016 ||| | ||||| || Sbjct 136 CGTCTCCGTGGAGG 149 >seq593 Length=58250 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| ||||| || ||||||||||| || |||||| | || ||||| || | Sbjct 29605 ATGCAAATCTTTGTAAAGACTCTTACTGGCAAGACTATTACCTTGGAGGTCGAGGGCTCT 29664 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || | ||| ||||| || || ||||| || || | || || | Sbjct 29665 GACACCATCGATAAT--GTCAAGACCAAGATCCAGGACAAGGAGGGAATCCCACCCGATC 29722 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 | ||||| | || ||||||||||| ||| | || || | || | | ||||| |||| Sbjct 29723 AACAACGTCTCATCTTTGCCGGAAAGCAACTCGAGGATGGTCGTACTCTTTCCGACTACA 29782 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||| ||||| ||| || | ||||||||| | ||| | |||||||| Sbjct 29783 ACATTCAAAAGGAGTCAACCCTCCATTTGGTTCTCCGTCTCCGTGGCGG 29831 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355801659292635