Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq420 111 1e-19 seq48 100 2e-16 seq456 93.3 3e-14 seq1623 91.5 1e-13 seq1674 84.2 1e-11 >seq420 Length=40905 Score = 111 bits (122), Expect = 1e-19 Identities = 164/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||||||||| || || | || ||||| || ||||| || || || || | Sbjct 14002 AATGCAGATTTTCGTCAAGACTTTGACTGGAAAGACCATCACACTGGAGGTCGAAGGATC 13943 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 ||||| | || ||| | || || || | | ||||| ||||| | || || |||| Sbjct 13942 AGACACCATCGACAATGTAAAGACCAAGA-TCCAAGACAAGGAAGGAATCCCACCCGATC 13884 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 |||| ||| | || ||||||||||| ||||| || || | |||||| || ||| |||| Sbjct 13883 AACAACGTCTCATCTTTGCCGGCAAGCAACTCGAGGATGGTCGCACTCTATCCGACTACA 13824 Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 |||| ||||| |||||||| | || || ||| | | | || |||||| Sbjct 13823 ACATTCAAAAGGAGTCCACTCTTCACTTGGTTCTCCGTCTCCGTGGAGGA 13774 Score = 96.9 bits (106), Expect = 2e-15 Identities = 175/251 (70%), Gaps = 5/251 (2%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||||||||| || || ||||| ||||| || || || | || ||||| | Sbjct 13546 AATGCAGATTTTCGTCAAGACTCTCACTGGAAAGACCATTACCTTGGAGGTTGAGGGATC 13487 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 ||||| | || ||| | || || || | | ||||| ||||| | || || || | Sbjct 13486 AGACACCATCGACAATGTCAAGACCAAGA-TCCAAGACAAGGAAGGAATCCCACCCGACC 13428 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | || || |||| ||||| ||||| ||||| || || | ||||| | || |||| Sbjct 13427 AGCAACGACTAATCTTTGCTGGCAAGCAACTTGAGGATGGCCGCACCCTCTCTGACTACA 13368 Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGATCAGCAGT-- 23846 |||||||||||||||| || | ||||| ||| | | | || ||||| ||| || | Sbjct 13367 ACATACAAAAAGAGTCTACTCTTCATTTGGTTCTCCGTCTCCGTGGAGG-TCAACAATAA 13309 Query 23847 TAAAGATGAAT 23857 |||| || ||| Sbjct 13308 TAAATATAAAT 13298 Score = 86.0 bits (94), Expect = 4e-12 Identities = 140/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||||||||| || || ||||| || || || || || | || ||||| | Sbjct 13774 AATGCAGATTTTCGTCAAGACTCTCACTGGCAAGACTATTACCTTGGAGGTTGAGGGATC 13715 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 || || | || || | || || || | || || || || ||| | || || |||| Sbjct 13714 TGATACCATCGACAACGTCAAGACCAAGA-TTCAAGATAAGGAGGGTATTCCACCCGATC 13656 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 |||| || | || ||||||||||| ||||| || || | ||||| | || |||| Sbjct 13655 AACAACGCCTTATCTTTGCCGGCAAGCAACTCGAGGATGGCCGCACCCTCTCTGACTACA 13596 Query 23789 ACATACAAAAAGAGTCCAC 23807 |||||||||||||||| || Sbjct 13595 ACATACAAAAAGAGTCTAC 13577 >seq48 Length=44992 Score = 100 bits (110), Expect = 2e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || || ||||| || || || ||||| | ||||| || | | Sbjct 22404 ATGCAGATTTTCGTCAAGACTCTCACTGGCAAGACTATCACCTTGGAAGTCGAGGGCTCA 22463 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || || || | | ||||| ||||| | || || ||||| Sbjct 22464 GACACCATCGATAATGTCAAGACCAAGA-TCCAAGACAAGGAAGGAATCCCACCCGATCA 22522 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || ||||||||||| || || || || | ||||| || ||| ||||| Sbjct 22523 ACAAAGACTCATCTTTGCCGGCAAGCAGCTCGAGGATGGTCGCACATTGTCCGACTACAA 22582 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 ||| ||||| ||||| || | ||||| ||| | | | || |||||| Sbjct 22583 CATTCAAAAGGAGTCTACTCTTCATTTGGTTCTCCGTCTCCGTGGAGGA 22631 >seq456 Length=67341 Score = 93.3 bits (102), Expect = 3e-14 Identities = 153/216 (71%), Gaps = 6/216 (3%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||| || ||||| || | || ||||| || ||||| ||||| ||||| Sbjct 21585 AACATGCAGATCTTTGTTAAGACTTTAACAGGAAAGACCATCACCCTCGAGGTTGAGGGA 21526 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | ||||| |||| ||| | || | || | | ||||| || || | || || || Sbjct 21525 TCTGACACCATTGAGAATGTCAAGGCCAAGA-TCCAAGACAAGGAGGGAATCCCCCCCGA 21467 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCAC--TTTAGGCGAT 23784 ||| || ||||| || |||||||| || ||| |||| |||| || || ||| || || Sbjct 21466 TCAGCAACGTTTGATCTTTGCCGGAAAGCAATTGGAGGACGGTCGTACCCTTTCGG--AT 21409 Query 23785 TACAACATACAAAAAGAGTCCACATTACATTTAGTT 23820 |||||||| ||||| ||||| || | || || ||| Sbjct 21408 TACAACATCCAAAAGGAGTCTACTCTCCACTTGGTT 21373 >seq1623 Length=5066 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || ||||||||||| || || || || ||||| | || ||||| | | Sbjct 328 ATGCAAATCTTTGTTAAAACCCTGACTGGTAAGACCATCACCTTGGAGGTTGAGGGCTCT 269 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || | || | |||| || || ||||| ||||| | || || |||||| Sbjct 268 GATACCATCGAGAACGTAAAGACCAAGATCCAAGACAAGGAAGGAATCCCCCCCGATCAA 209 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || ||| | || |||||||| || ||||| || || | || ||| | ||| |||||| Sbjct 208 CAACGTCTTATCTTTGCCGGAAAGCAACTTGAGGATGGTCGTACTCTTTCCGACTACAAC 149 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTT 23820 || ||||| ||||| || | ||||| ||| Sbjct 148 ATCCAAAAGGAGTCTACTCTTCATTTGGTT 119 >seq1674 Length=6646 Score = 84.2 bits (92), Expect = 1e-11 Identities = 91/119 (76%), Gaps = 4/119 (3%) Strand=Plus/Plus Query 23704 GACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAA 23763 ||||| ||||| | || || |||||||| ||| | || || ||||| || ||||| || Sbjct 16 GACAAGGAAGGAATCCCCCCCGATCAACAACGTCTTATTTTCGCCGGAAAGCAACTCGAG 75 Query 23764 GACGAACGCAC--TTTAGGCGATTACAACATACAAAAAGAGTCCACATTACATTTAGTT 23820 |||| ||| || ||| || |||||||||| ||||| |||||||| | ||||| ||| Sbjct 76 GACGGACGTACCCTTTCGG--ATTACAACATCCAAAAGGAGTCCACTCTCCATTTGGTT 132 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337951906514540