Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq6140 114 1e-20 seq7603 107 2e-18 >seq6140 Length=1248 Score = 114 bits (126), Expect = 1e-20 Identities = 151/207 (73%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 29669 TAGACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGA 29728 |||| || ||||| ||||| ||||| || || || ||||| | || || ||||| || Sbjct 388 TAGAGATGCGCATCGCCCAGCGTGTGAACGAAATCACCCGGCTGCAGACCCGTGACCTGC 447 Query 29729 GCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACCCCGAGCCCCATG 29788 |||| |||| || || || | ||| ||||| || || ||||| ||||| || Sbjct 448 GCCACCATGAGGGTCAGCAGGGCATAGGATGCGATATTGAACGGCACGCCGAGAAAGATA 507 Query 29789 TCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTCACGTAAAACTGACAC 29848 || | || | ||||||||||||||| || |||| ||||||| |||||| ||||| || Sbjct 508 TCGGCGGAGCGCTGGTAGAGCTGGCAGGAAAGCTTTCCGTCGGCCACGTAGAACTGGAAC 567 Query 29849 ATGGCA-TGGCACGGAGGAAGGGCCAT 29874 | |||| ||||| || || || ||||| Sbjct 568 A-GGCAGTGGCAGGGCGGCAGCGCCAT 593 >seq7603 Length=749 Score = 107 bits (118), Expect = 2e-18 Identities = 142/195 (73%), Gaps = 4/195 (2%) Strand=Plus/Minus Query 29726 TGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACCCCGAGCCCC 29785 || |||||||||| ||||| || | ||||||||||||||| || || || ||||| | Sbjct 622 TGGGCCATCATGTGGGTGAGCAGCGCGTAGCTGGCGATGTTGAACGGAACGCCGAGGAAC 563 Query 29786 ATGTC--CCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTCACGTAAAACT 29843 ||||| | ||| | |||||| |||||||| ||||||| |||||| ||||| |||| Sbjct 562 ATGTCGGCGCTG--CGCTGGTACAGCTGGCAGGAGAGCTTGCCGTCGGCGACGTAGAACT 505 Query 29844 GACACATGGCATGGCACGGAGGAAGGGCCATGAGACCCAAGTCTTTGGGGTTCCAGGCAC 29903 | | | || |||||||| | |||||||| | | ||| | |||||| || Sbjct 504 GGAAGAAAGCGTGGCACGGCGCCAGGGCCATCTGCGGAATGTCGGCGACGTTCCACGCCG 445 Query 29904 ACACGATGATGCGCC 29918 | |||||||| |||| Sbjct 444 AAACGATGATCCGCC 430 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406093873653430