Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq689 138 1e-27 seq98 129 5e-25 >seq689 Length=46727 Score = 138 bits (152), Expect = 1e-27 Identities = 211/298 (71%), Gaps = 7/298 (2%) Strand=Plus/Minus Query 4547 ACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAA 4606 ||| ||||| || || |||||||||||||| | ||| |||| ||||| ||||| || || Sbjct 18316 ACAGGCAAAGTCGCAGTGCAAACCTTCGTCACGGCTGATCAACTCGTTGGAAAAGGTCAA 18257 Query 4607 TCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATAT--AGCGGCAAATGACCCAGAAAAG 4664 || ||||| || || | ||| || |||||||| || | | | || | ||||| || Sbjct 18256 ACCTGGCATCAATCCACGCTTCTTGAGCCAAAAGATTGAACAGAAACT--ACCAGAGAAA 18199 Query 4665 AATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCT 4724 || || || || ||||| |||||||| || || || | ||||| ||| || | Sbjct 18198 AAGATACCCTCGACGGCTGCAAACGCCACCAAACGCTCGGCAAACGACTTGGAATT---T 18142 Query 4725 TTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCG 4784 |||||| | |||||||||| ||| || ||||| || || ||||| || | ||| || Sbjct 18141 GAGATCCATCTCAATGCCCAGTCAGCCTTCTTCTTGACACATGGAATAGTCTCTATGGCA 18082 Query 4785 TTAAATAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTAT 4842 || || || || ||||||| ||| | | |||||| || || |||| || |||| Sbjct 18081 TTGAACAAATTGGCCTTTTCAACTGGATTCTTAATATATGTATCGATTAATAAACTAT 18024 >seq98 Length=772300 Score = 129 bits (142), Expect = 5e-25 Identities = 557/871 (64%), Gaps = 20/871 (2%) Strand=Plus/Plus Query 4256 TTTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATT 4315 |||||| || || || || || || |||||||| |||||||||| | || || | Sbjct 410101 TTTTTGATAATCACCCACACGTTTCTCAAAGAAATTGGTTTTGCCTTGCAGGGAGATCAT 410160 Query 4316 TTCCATAAAATCAAACGGATTAGTTGCGTTGTA-ATGTT--TTTCACACTTTAGAGCTAC 4372 |||||||||||||||||||| || || | || || || | | || | | || | Sbjct 410161 CTCCATAAAATCAAACGGATTGGTGGCATGATATATTTTGGTATAACCCAGTTC--CTGC 410218 Query 4373 AAGCAATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTC-GCAGTTAATTCCAA 4431 | || ||| ||| || ||||| || |||||||| ||| |||| ||| || || || | Sbjct 410219 A-GCCATCTGTCTGCAACAAACTCAATATACTGTGACATCAGTTTTGCA-TTCATCCCGA 410276 Query 4432 TTAATCTCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGA 4491 | | || || | || | ||| | ||| || | ||| || ||| || || || Sbjct 410277 TCAGGGCAACCGGCAAGGCATCTGTAATAAATTCCTTTTCGATTTCTACCGCGTCGCGGA 410336 Query 4492 TTATATCTTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAATAAA-CAC 4550 | || | | | || | |||||||| | || || | || | || Sbjct 410337 TAATTCCATGAACGACTTCCTGGCTCAGTTTATTTT-TGAGCATTTTATAAAGCAGGCAG 410395 Query 4551 GCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCG 4610 ||||| |||||||||| || || |||||| ||||| || ||| ||| |||| || Sbjct 410396 GCAAATTCACAATGCATCCCCTCATCTCTGGAAATCAACTCATTACTAAAGGTTAGCCCT 410455 Query 4611 GGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATG 4670 ||||| | ||||| ||||| | ||| || || | || ||| ||||| ||| Sbjct 410456 GGCATCAGGCCTCTTTTTTTCAACCAGAAGATCGAACAGAAGCTCCCGCTGAAGAAAATG 410515 Query 4671 CCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTT--GTCTTTAA 4728 ||||| || ||||| || || || || || | || ||| | | | || Sbjct 410516 CCTTCCACTGCGGCGAAAGCCACCAAACGTTCGGCAAAA--------TTTCCGCCCTCAA 410567 Query 4729 TCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAA 4788 |||| |||||||| | ||||||||||| || || |||| || | || || | | Sbjct 410568 TCCAGCGCAATGCCCATTCTGCTTTTTTCTTTACACAAGGAACCGTCTCTACGGCATGGA 410627 Query 4789 ATAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTT 4848 | | | |||||| || |||| |||||| || || || || || ||| ||| Sbjct 410628 ACAGCCTGTCTTTTTCTTCAGGATCTTTAATATAGGTATCGATCAGCAGCGCATAGGTTT 410687 Query 4849 CAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTT 4908 |||| || || ||||| || ||||| || || ||||| || | ||||| | | | Sbjct 410688 CAGAGTGGATGTTTTCCATCATGATCTGGAAGCCATAAAAACAACGGGCTTCGGGAAGCT 410747 Query 4909 GAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAA 4968 | |||||| | || | || | | |||||| ||||| || |||||||| || |||| Sbjct 410748 GTACTTCGCTCATGAAGTTCACTGCAAGGTTTTCATTTACAATGCCGTCACTTGCAGCAA 410807 Query 4969 AAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGG 5028 |||| || | | |||||| || || | | ||| | | || | || | |||||| Sbjct 410808 AAAAAGCAAGTATATGAGAAATGAAATGACGCTCGCCTGTATTTAAGTTGTCCCAGTGCT 410867 Query 5029 GCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGT 5088 | || | || | |||| ||||||| | ||||| || ||||| || || | Sbjct 410868 TCTGGTCATCAGAAAGGTCAATTTCTTCAGCGGTCCAGAAACTTGCTTCACTCTTCTTAT 410927 Query 5089 ACATAGACCAAATATCAGGATACTGAATCGG 5119 |||| ||| || ||||| || | ||| || Sbjct 410928 ACATTTCCCAGATTTCAGGGTATTTAATAGG 410958 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426976708638665