Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_030696.1 Length=93139 Score E Sequences producing significant alignments: (Bits) Value seq1862 212 4e-50 seq3603 104 1e-17 seq582 86.0 4e-12 >seq1862 Length=5913 Score = 212 bits (234), Expect = 4e-50 Identities = 262/356 (74%), Gaps = 2/356 (1%) Strand=Plus/Plus Query 71920 GAGGACACAACAGTGGCAAACGACACCGTGATCACCGTGATCGGAAATCTGACCGCCGAT 71979 ||||| || ||| |||| ||||||| | |||||||| |||||||| ||||| || ||| Sbjct 5176 GAGGA-ACCACA-TGGCTGGCGACACCATCATCACCGTCATCGGAAACCTGACGGCTGAT 5233 Query 71980 CCCGAACTGCGCTTCACCCCCTCGGGCGCGCCGGTCGCCAACTTCACCGTCGCAAGCACC 72039 || ||||| || |||||||| |||| || |||| || |||||||| || || ||| Sbjct 5234 CCTGAACTTCGTTTCACCCCGGCGGGTGCCGCGGTTGCAAACTTCACGGTTGCTTCCACG 5293 Query 72040 CCGCGGTACTTCGACAAGCAGTCCAACGAGTGGAAGGACGCCGAGGCGCTCTTCCTGCGC 72099 || || ||||||| | ||||| || ||||| |||| ||| ||||| ||| |||| Sbjct 5294 CCCCGTACCTTCGACCGTAATTCCAATGAATGGAAAGACGGCGATGCGCTGTTCATGCGT 5353 Query 72100 TGCAACATCTGGCGCGAGCCGGCCGAGAACGTCACCGAGTCGCTGTCCAAGGGCATGCGC 72159 ||||||||||||||||| | |||||||||||| | ||| || || || || Sbjct 5354 TGCAACATCTGGCGCGAAGCAGCCGAGAACGTCGCGGAGAGCTTGACCCGTGGTTCACGA 5413 Query 72160 GTCATCGTCCAGGGTCGCCTCAAGCAGCGCAGCTACGAGACGAAGGAAGGCGAGAACCGG 72219 || ||||| || || ||||||||||| ||||| || || ||||| || || Sbjct 5414 GTAATCGTGAGCGGCCGGCTCAAGCAGCGTTCGTACGAAACTCGCGAGGGCGAAAAGCGA 5473 Query 72220 ACGGTCATCGAGCTCGAGGTCGAGGAGATCGGCCCCGCACTGCGGTACGCCACCGC 72275 || ||| |||||||||| ||||| || ||||| || ||||| ||||||||| || Sbjct 5474 ACTGTCGTCGAGCTCGAAGTCGATGAAATCGGTCCTTCACTGAAGTACGCCACGGC 5529 >seq3603 Length=4408 Score = 104 bits (114), Expect = 1e-17 Identities = 164/233 (70%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 43052 AGGAGTTCGACGCGGACCCGGGCGTGGACGTCATCATCCTGGCCCGCGGCGGCGGCTCGA 43111 |||| ||||||| ||| || || |||||||||||||| || ||||||||||| Sbjct 211 AGGAACTCGACGCCAACCTGGTAGTCGACGTCATCATCCTCGCTCGCGGCGGCGGTAGCG 270 Query 43112 AGGAAGACCTCCTCCCGTGGTCCGACGAGGCTCTGGTTCGCGCCGCGTTCGCGTCTGCA- 43170 || || ||||| |||| |||||||| || ||| |||||| | || ||||| Sbjct 271 TCGAGGATCTCCTGCCGTTCTCCGACGAAGCGCTGTGCCGCGCCATCGTGGC--CTGCAC 328 Query 43171 -ACCCCGGTTGTGTCTGCGATTGGCCACGAGAATGATCGGCCGCTCCTCGACCGCGTTGT 43229 || ||| | || ||| || || |||||| || | |||||| |||| ||| | Sbjct 329 GACGCCGATCGTCAGTGCCATCGGACACGAGCCGGACAGCCCGCTCAGTGACCACGTCGC 388 Query 43230 GGACCTTCGAGCGGCAACTCCGACGGATGCAGCGAAACGTGTCGTACCCGACG 43282 ||||| || || || || || ||||| || || || || ||||||||||||| Sbjct 389 CGACCTGCGCGCAGCCACACCCACGGACGCGGCCAAGCGCGTCGTACCCGACG 441 >seq582 Length=79996 Score = 86.0 bits (94), Expect = 4e-12 Identities = 89/114 (78%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 47504 ATGCCGGATGCACACGGCGGCAAAGGATCTGCCGTTGGCACGGTGATTCCCAC-CGTGGA 47562 ||||| || | || | ||||| || | |||| |||| ||||||||||| || || Sbjct 74576 ATGCCCGACGTGCATGCCGGCATCGGCGCCACCGTCGGCAGCGTGATTCCCACGCGCGG- 74634 Query 47563 TGCCGTGATCCCGGCCGCGGTCGGCGTGGACATCGGCTGCGGCATGATCGGCGT 47616 ||||| ||||||||||| || ||||| ||||||||||||||||||| || ||| Sbjct 74635 CGCCGTCATCCCGGCCGCCGTGGGCGTCGACATCGGCTGCGGCATGAACGCCGT 74688 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 297869149245500