Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_030901.1 Length=92618 Score E Sequences producing significant alignments: (Bits) Value seq1862 206 2e-48 seq3603 104 1e-17 seq582 82.4 5e-11 >seq1862 Length=5913 Score = 206 bits (228), Expect = 2e-48 Identities = 261/356 (73%), Gaps = 2/356 (1%) Strand=Plus/Plus Query 70857 GAGGACACAACAGTGGCAAACGACACCGTGATCACCGTGATCGGAAATCTGACCGCCGAT 70916 ||||| || ||| |||| ||||||| | |||||||| |||||||| ||||| || ||| Sbjct 5176 GAGGA-ACCACA-TGGCTGGCGACACCATCATCACCGTCATCGGAAACCTGACGGCTGAT 5233 Query 70917 CCCGAACTGCGCTTCACCCCCTCGGGCGCGCCGGTCGCCAACTTCACCGTCGCAAGCACC 70976 || ||||| || |||||||| |||| || |||| || |||||||| || || ||| Sbjct 5234 CCTGAACTTCGTTTCACCCCGGCGGGTGCCGCGGTTGCAAACTTCACGGTTGCTTCCACG 5293 Query 70977 CCGCGGTACTTCGACAAGCAGTCCAACGAGTGGAAGGACGCCGAGGCGCTCTTCCTGCGC 71036 || || ||||||| | ||||| || ||||| |||| ||| ||||| ||| |||| Sbjct 5294 CCCCGTACCTTCGACCGTAATTCCAATGAATGGAAAGACGGCGATGCGCTGTTCATGCGT 5353 Query 71037 TGCAACATCTGGCGCGAGCCGGCCGAGAACGTCACCGAGTCGCTGTCCAAGGGCATGCGC 71096 ||||||||||||||||| | |||||||||||| | ||| || || || || Sbjct 5354 TGCAACATCTGGCGCGAAGCAGCCGAGAACGTCGCGGAGAGCTTGACCCGTGGTTCACGA 5413 Query 71097 GTCATCGTCCAGGGTCGCCTCAAGCAGCGCAGCTACGAGACGAAGGAAGGCGAGAACCGG 71156 || ||||| || || ||||||||||| ||||| || || ||||| || || Sbjct 5414 GTAATCGTGAGCGGCCGGCTCAAGCAGCGTTCGTACGAAACTCGCGAGGGCGAAAAGCGA 5473 Query 71157 ACGGTCATCGAGCTCGAGGTCGAGGAGATCGGCCCCGCGCTGCGGTACGCCACCGC 71212 || ||| |||||||||| ||||| || ||||| || | ||| ||||||||| || Sbjct 5474 ACTGTCGTCGAGCTCGAAGTCGATGAAATCGGTCCTTCACTGAAGTACGCCACGGC 5529 >seq3603 Length=4408 Score = 104 bits (114), Expect = 1e-17 Identities = 164/233 (70%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 42743 AGGAGTTCGACGCGGACCCGGGCGTGGACGTCATCATCCTGGCCCGCGGCGGCGGCTCGA 42802 |||| ||||||| ||| || || |||||||||||||| || ||||||||||| Sbjct 211 AGGAACTCGACGCCAACCTGGTAGTCGACGTCATCATCCTCGCTCGCGGCGGCGGTAGCG 270 Query 42803 AGGAAGACCTCCTCCCGTGGTCCGACGAGGCTCTGGTTCGCGCCGCGTTCGCGTCTGCA- 42861 || || ||||| |||| |||||||| || ||| |||||| | || ||||| Sbjct 271 TCGAGGATCTCCTGCCGTTCTCCGACGAAGCGCTGTGCCGCGCCATCGTGGC--CTGCAC 328 Query 42862 -ACCCCGGTTGTGTCTGCGATTGGCCACGAGAATGATCGGCCGCTCCTCGACCGCGTTGT 42920 || ||| | || ||| || || |||||| || | |||||| |||| ||| | Sbjct 329 GACGCCGATCGTCAGTGCCATCGGACACGAGCCGGACAGCCCGCTCAGTGACCACGTCGC 388 Query 42921 GGACCTTCGAGCGGCAACTCCGACGGATGCAGCGAAACGTGTCGTACCCGACG 42973 ||||| || || || || || ||||| || || || || ||||||||||||| Sbjct 389 CGACCTGCGCGCAGCCACACCCACGGACGCGGCCAAGCGCGTCGTACCCGACG 441 >seq582 Length=79996 Score = 82.4 bits (90), Expect = 5e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 46835 ATGCCGGATGCACACGGCGGCAAAGGATCTGCCGTTGGCACGGTGATACCCACGGTGGAC 46894 ||||| || | || | ||||| || | |||| |||| ||||| |||||| | | Sbjct 74576 ATGCCCGACGTGCATGCCGGCATCGGCGCCACCGTCGGCAGCGTGATTCCCACGCGCGGC 74635 Query 46895 GCCGTGATCCCGGCCGCGGTCGGCGTGGACATCGGGTGCGGCATGATCGGCGT 46947 ||||| ||||||||||| || ||||| |||||||| |||||||||| || ||| Sbjct 74636 GCCGTCATCCCGGCCGCCGTGGGCGTCGACATCGGCTGCGGCATGAACGCCGT 74688 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 296202233813095