Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_030903.1 Length=152069 Score E Sequences producing significant alignments: (Bits) Value seq469 91.5 1e-13 >seq469 Length=409663 Score = 91.5 bits (100), Expect = 1e-13 Identities = 185/272 (68%), Gaps = 11/272 (4%) Strand=Plus/Minus Query 17666 CTTAACAACGAGATCATGATTCAGAAGGACGGCAAGTTCCAGTTTGAAAAGGACAAAGAA 17725 || || || ||||||||||| | ||||||| | |||| | ||||||| ||||| || Sbjct 225376 CTCAATAATGAGATCATGATCAAAAAGGACGACGAGTTTAACCTTGAAAAAGACAAGGAG 225317 Query 17726 GCCGT----TCATAGCTATTTTGTGGACTATGTGAATCAGAACACTGTGTTCTTCCACAA 17781 ||||| ||| || ||| |||| ||||| ||| | || || || ||||| ||| Sbjct 225316 GCCGTAAGGTCA----TACTTTCTGGATTATGTCAATAAAAATACCGTTTTCTTTTACAC 225261 Query 17782 CCTTAAAGAGAAGCTTGACTACTTGATCGAAAACGAGTATTACGAAGAGGAGTTTTTATC 17841 ||| ||||| || | |||||| |||| |||||| | || ||| | | | |||| | Sbjct 225260 CCTGAAAGAAAAAATAGACTACCTGATTGAAAACAATTACTAC-ATCA--ATTTTTAAGA 225204 Query 17842 TAAATACTCTTTCGAGGATATCAAAGAGGTTTTCAAGCTGGCTTACAGTAAGAAGTTCCG 17901 | || || || || || || || ||| | | | | || || || ||||| Sbjct 225203 GCAGTATTCCTTTGAAGAGCTCCAAAGGGTATATGATTTTGTGTATTCCAAAAAATTCCG 225144 Query 17902 TTTCCCTTCATTCATGAGTGCATTTAAGTTTT 17933 || | || ||||||||||| |||||||||| Sbjct 225143 CTTTCAGTCTTTCATGAGTGCCTTTAAGTTTT 225112 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 486407633354200