Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_030909.1 Length=50183 Score E Sequences producing significant alignments: (Bits) Value seq29 187 8e-43 seq685 178 4e-40 seq909 159 1e-34 seq329 113 1e-20 seq74 107 6e-19 seq249 100 9e-17 seq6650 91.5 5e-14 seq60 89.7 2e-13 seq1130 84.2 7e-12 >seq29 Length=371730 Score = 187 bits (206), Expect = 8e-43 Identities = 281/393 (72%), Gaps = 16/393 (4%) Strand=Plus/Minus Query 33921 GCCCGGAGCGAGCTGCTCGAATCGCGAGTACTTACCCAGGAACGCGCACCGGACAGTGC- 33979 |||||| || || | |||||| || | ||| ||||| | ||| || || |||| Sbjct 206495 GCCCGGCGCCAGGTTCTCGAAGCGGGTGTATTTACCGATGAAGGCCAGGCGCGTGGTGCC 206436 Query 33980 --TTGGCTCGCCGTTGCGGTGCTTCGCGATGATCAACTCAGCCACGCCGCGGTACTGGGT 34037 ||||| ||||| || || || |||| || | ||||| | ||| | || ||| Sbjct 206435 GATTGGC---CCGTTACGCTGTTTACCGATAATGATTTCAGCGATGCCTTTATGCTCGGT 206379 Query 34038 GTCCGGGTGATAGACCTCGTCTCGGTACACGAACATGATCACGTCGGCGTCCTGCTCGAT 34097 ||||||||||| |||||||| ||||| ||||||||||||||||| || ||||||||||| Sbjct 206378 CTCCGGGTGATACACCTCGTCCCGGTATACGAACATGATCACGTCAGCATCCTGCTCGAT 206319 Query 34098 CGCCCCGGACTCGCGCAGGTCCGACATCATCGGTCGCTTGTTCGGCCGCTGCTCCAGGGA 34157 ||| ||||| || |||| ||| || | ||||| || |||||||| |||||||| || || Sbjct 206318 CGCTCCGGATTCCCGCAAGTCGGAGTTGATCGGGCGTTTGTTCGGACGCTGCTCAAGAGA 206259 Query 34158 GCGGTTGAGCTGCGACAGCACGATCACGGGGATACCAAGCTCCATGGCCAGTAGCTTGC- 34216 ||||||||||||||||| | | ||| ||| | ||| ||||||| |||| | Sbjct 206258 TCGGTTGAGCTGCGACAGGGCAACCACCGGGCAGTTGAATTCCTTGGCCAG-GGCTTTCA 206200 Query 34217 ACTGGCGGGACATGTCGCTGACGTCCTCGGTGCGAGTTGAC-TTGCCGGAGC------TC 34269 || |||||| || ||| | || | ||| || | || | || ||||| || Sbjct 206199 ACGAGCGGGAAATCTCGGAAATCTCGTTGGTCCG-GCTGTCACCGCTGGAGCCCGGGATC 206141 Query 34270 TCCAGCAACTGCAGGTAGTCCACCACCAGCAGG 34302 | || ||||||||||||||| | || | |||| Sbjct 206140 TGCATCAACTGCAGGTAGTCGATCATGATCAGG 206108 >seq685 Length=77197 Score = 178 bits (196), Expect = 4e-40 Identities = 197/260 (76%), Gaps = 2/260 (1%) Strand=Plus/Plus Query 33930 GAGCTGCTCGAATCGCGAGTACTTACCCAGGAACGCGCACCGGACAGTGCTTGGCTCGCC 33989 |||| || | || || | | ||| || | |||||| ||| || || | | || || Sbjct 14077 GAGCGGCACAAAACGAGTTTCCTTGCCAATAAACGCGGTCCGCACGGTACCGGTTTCACC 14136 Query 33990 GTTGCGGTGCTTCGCGATGATCAACTCAGCCACGCCGCGGTACTGGGTGTCCGGGTGATA 34049 ||| |||||||| ||| ||||||||| || || || ||||| |||||||||| || Sbjct 14137 GTTCCGGTGCTTGCCGAGGATCAACTCGGCAACCCCCTTGTACTCAGTGTCCGGGTTGTA 14196 Query 34050 GACCTCGTCTCGGTACACGAACATGATCACGTCGGCGTCCTGCTCGATCGCCCCGGACTC 34109 |||||||||||| || ||||||||||| | ||| ||||||||||||||||| |||||||| Sbjct 14197 GACCTCGTCTCGATAGACGAACATGATGATGTCCGCGTCCTGCTCGATCGCGCCGGACTC 14256 Query 34110 GCGCAGGTCCGACATCATCGGTCGCTTGTTCGGCCGCTGCTC-CAGGGAGCGGTTGAGCT 34168 |||| ||| | ||| || |||||||| ||||||||||| || | |||| | || Sbjct 14257 CCGCAAGTCTGCGTTCACAGGGCGCTTGTTGGGCCGCTGCTCACACTG-GCGGGACAACT 14315 Query 34169 GCGACAGCACGATCACGGGG 34188 |||| ||| |||| |||||| Sbjct 14316 GCGATAGCGCGATGACGGGG 14335 >seq909 Length=21192 Score = 159 bits (176), Expect = 1e-34 Identities = 158/202 (78%), Gaps = 2/202 (1%) Strand=Plus/Minus Query 33988 CCGTTGCGGTGCTTCGCGATGATCAACTCAGCCACGCCGCGGTACTGG-GTGTCCGGGTG 34046 ||||| || || || ||||||| | || ||| || || |||| | ||| |||| Sbjct 7971 CCGTTACGTTGTTTACCGATGATGATTTCGGCCGTTCCCTTGT-CTGGCGAGTCGGGGTT 7913 Query 34047 ATAGACCTCGTCTCGGTACACGAACATGATCACGTCGGCGTCCTGCTCGATCGCCCCGGA 34106 ||| |||||||| ||||| | ||||| |||||||||||| ||||||||||| || || || Sbjct 7912 ATACACCTCGTCGCGGTAAATGAACAGGATCACGTCGGCATCCTGCTCGATAGCGCCCGA 7853 Query 34107 CTCGCGCAGGTCCGACATCATCGGTCGCTTGTTCGGCCGCTGCTCCAGGGAGCGGTTGAG 34166 ||||||| ||| ||||||| || || || ||||| || || ||||| |||||||| || Sbjct 7852 TTCGCGCAAGTCGGACATCACGGGACGTTTATTCGGGCGTTGTTCCAGCGAGCGGTTCAG 7793 Query 34167 CTGCGACAGCACGATCACGGGG 34188 ||| |||||| ||||||||||| Sbjct 7792 CTGGGACAGCGCGATCACGGGG 7771 >seq329 Length=155757 Score = 113 bits (124), Expect = 1e-20 Identities = 113/147 (77%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 34042 GGGTGATAGACCTCGTCTCGGTACACGAACATGATCACGTCGGCGTCCTGCTCGATCGCC 34101 ||||| || |||||||| ||||| |||||||| |||| ||| |||||||| || ||||| Sbjct 6351 GGGTGGTACACCTCGTCCCGGTAGACGAACATAATCAGGTCCGCGTCCTGTTCAATCGCA 6410 Query 34102 CCGGACTCGCGCAGGTCCGACATCATCGGTCGCTTGTTCGGCCGCTGCTCCAGGGAGCGG 34161 ||| || |||||||| | | ||||| ||||| || ||||| ||||||| ||| Sbjct 6411 CCGCTATCACGCAGGTCTGCGTTGATCGGACGCTTATTTGGCCGTCGCTCCAGTTCTCGG 6470 Query 34162 TTGAGCTGCGACAGCACGATCACGGGG 34188 |||||||| || ||| | | ||| ||| Sbjct 6471 TTGAGCTGGGAAAGCGCAACCACCGGG 6497 >seq74 Length=23094 Score = 107 bits (118), Expect = 6e-19 Identities = 145/202 (72%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 33987 GCCGTTGCGGTGCTTCGCGATGATCAACTCAGCCACGCCGCGGTACTGGGTGTCCGGGTG 34046 |||||| || ||| ||||||| | || || | ||| || | ||| |||||||| Sbjct 5680 GCCGTTACGAGCCTTGCCGATGATGATTTCTGCAATGCCTTTGTGTTCGGTCTCCGGGTG 5739 Query 34047 ATAGACCTCGTCTCGGTACACGAACATGATCACGTCGGCGTCCTGCTCGATCGCCCCGGA 34106 ||| |||||| ||||||||||||||||||| ||| |||||||| ||||| || ||| Sbjct 5740 ATATTTCTCGTCGCGGTACACGAACATGATCAGGTCCGCGTCCTGTTCGATGGCGCCGCT 5799 Query 34107 CTCGCGCAGGTCCGACATCATCGGTCGCTTGTTCGGCCGCTGCTCCAGGGAGCGGTTGAG 34166 || |||| || | | || || ||||||||||| || | ||||| || ||||| Sbjct 5800 ATCACGCAAATCGGCGTTGATAGGGCGCTTGTTCGGGCGGCGTTCCAGTTCACGATTGAG 5859 Query 34167 CTGCGACAGCACGATCACGGGG 34188 ||| || || ||| || ||| Sbjct 5860 CTGAGAAAGAGCGACTACAGGG 5881 >seq249 Length=98374 Score = 100 bits (110), Expect = 9e-17 Identities = 109/145 (75%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 47934 AGTTCGTCCGCGAAACCCGGCGAGCGTCGATTTCGGCGATCCAGCGCAAGCTGAAGATCG 47993 ||||||| | |||| ||| || || ||||| || || | ||||||||||||||||| | Sbjct 86566 AGTTCGTGCTTGAAAGCCGCCGCGCCTCGATCTCCGCCGTACAGCGCAAGCTGAAGATTG 86625 Query 47994 GCTACAACCGCGCAGCCCGCATCATCGAGCGGATGGAGAAAGAAGGCGTAGTCACAGCGG 48053 ||||||||||||| |||||||| ||||| ||||| | | ||||| ||||| || Sbjct 86626 GCTACAACCGCGCTGCCCGCATGATCGAAGCCATGGAAATGGCCGGCGTGGTCACCTCGA 86685 Query 48054 CCGACAGCAACGGCGGCCGCGAGGT 48078 ||| ||||||| ||||| || Sbjct 86686 TGAACACCAACGGCTCGCGCGAAGT 86710 >seq6650 Length=479 Score = 91.5 bits (100), Expect = 5e-14 Identities = 99/129 (77%), Gaps = 2/129 (2%) Strand=Plus/Plus Query 34054 TCGTCTCGGTACACGAACATGATCACGTCGGCGTCCTGCTCGATCGCCCCGGACTCGCGC 34113 ||||| || || ||||| || | ||||||||||||||||||||||| |||||| || ||| Sbjct 220 TCGTCGCGATAAACGAAGATCACCACGTCGGCGTCCTGCTCGATCGACCCGGATTCACGC 279 Query 34114 AGGTCCGACATCATCGGTCGCTTGT-TCGGCCGCTGCTCCAGGGAGCGGTTGAGCTGCGA 34172 ||||| || | | ||| ||||||| | || ||| |||| ||| |||||| || Sbjct 280 AGGTCGGAGAGCTGCGGGCGCTTGTCTTCGCGGCT-TTCCACCTGACGGGAGAGCTGTGA 338 Query 34173 CAGCACGAT 34181 |||| |||| Sbjct 339 CAGCGCGAT 347 >seq60 Length=244765 Score = 89.7 bits (98), Expect = 2e-13 Identities = 136/191 (71%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 40019 TCCTGTTCCTCCCACTTCAGCGTCACGGTGCCGTCGTCATTGAAGACCATGTCGATGCCG 40078 ||||| | |||||| ||| ||||||| ||||||||||||||| || || | || Sbjct 244056 TCCTGCTGCTCCCATCTCACCGTCACGCTGCCGTCGTCATTGAGTGTCAGCTCAAGCTCG 243997 Query 40079 TCCGTCTCGGATAGCAGTTCCATCACCTGATCCCACGCTTCATCCGGATCCGTGTCCAGG 40138 || || || | | || || ||||| |||||| | |||| ||||||||| || Sbjct 243996 TCGGTATCAGCGATCACGCTCAGCACCTCCTCCCACTCCCGATCCCCATCCGTGTCAAGA 243937 Query 40139 CGATGGATCGTCACCGTGCGCAGGTCCTGCGCTTTC-GGTGAGTTGATCATCTCCGATAT 40197 ||||| ||||||||| |||| | ||||||| | ||||| ||||||||| || | Sbjct 243936 CGATGAATCGTCACCCAGCGCTGCGCCTGCGCGACCGGGTGA-TTGATCATCGATGAGAC 243878 Query 40198 GCGGAGCCCCA 40208 ||| || |||| Sbjct 243877 GCGCAGACCCA 243867 >seq1130 Length=54118 Score = 84.2 bits (92), Expect = 7e-12 Identities = 73/91 (80%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 34033 TGGGTGTCCGGGTGATAGACCTCGTCTCGGTACACGAACATGATCACGTCGGCGTCCTGC 34092 ||| | | ||||| || |||||||| |||| |||||| |||| | |||||||| ||| Sbjct 33986 TGGCTTTGCGGGTTATCCACCTCGTCGCGGTGCACGAAGATGACGATATCGGCGTCTTGC 33927 Query 34093 TCGATCGCCCCGGACTCGCGCAGGTCCGACA 34123 ||||| || ||||| ||||||||||| |||| Sbjct 33926 TCGATGGCGCCGGAGTCGCGCAGGTCGGACA 33896 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160437313332450