Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_030911.1 Length=45858 Score E Sequences producing significant alignments: (Bits) Value seq1862 244 3e-60 seq6710 87.8 5e-13 >seq1862 Length=5913 Score = 244 bits (270), Expect = 3e-60 Identities = 278/373 (75%), Gaps = 0/373 (0%) Strand=Plus/Plus Query 36166 ACTACATGGCAGGCGAAACCATCATCACGGTAATCGGCAACCTGACAGCCGATCCGGAAC 36225 || ||||||| ||||| ||||||||||| || ||||| |||||||| || ||||| |||| Sbjct 5181 ACCACATGGCTGGCGACACCATCATCACCGTCATCGGAAACCTGACGGCTGATCCTGAAC 5240 Query 36226 TGCGGTTCACTCCGTCCGGCGCGGCGGTCGCGAACTTCACGGTCGCTTCGACTCCGCGAC 36285 | || ||||| ||| | || || ||||| || ||||||||||| ||||| || || || Sbjct 5241 TTCGTTTCACCCCGGCGGGTGCCGCGGTTGCAAACTTCACGGTTGCTTCCACGCCCCGTA 5300 Query 36286 AGTTCGACCGGGACGCGAACGAGTGGAAGGACGGCGATCCGCTGTTCATGCGCTGCAACC 36345 |||||||| | | || || ||||| ||||||||| ||||||||||||| |||||| Sbjct 5301 CCTTCGACCGTAATTCCAATGAATGGAAAGACGGCGATGCGCTGTTCATGCGTTGCAACA 5360 Query 36346 TGTGGCGTGACGCGGCGGAGAACGTCACGGACTCGCTGTCGAAGGGGACTCGGGTCATCG 36405 | ||||| || || || ||||||||| |||| || | || | || || |||| Sbjct 5361 TCTGGCGCGAAGCAGCCGAGAACGTCGCGGAGAGCTTGACCCGTGGTTCACGAGTAATCG 5420 Query 36406 TGCAGGGCCGGCTGAAACAGCGGAGCTACGAGGACAAAGAGGGCGTCACGCGGACCATCG 36465 || |||||||| || ||||| ||||| ||||||| | ||| || ||| Sbjct 5421 TGAGCGGCCGGCTCAAGCAGCGTTCGTACGAAACTCGCGAGGGCGAAAAGCGAACTGTCG 5480 Query 36466 TCGAGCTGGAAGTGGACGAGATCGGTCCGTCCCTGAAGTACGCGACGGCGAACGTGACGA 36525 ||||||| ||||| || || |||||||| || ||||||||||| ||||| || || | | Sbjct 5481 TCGAGCTCGAAGTCGATGAAATCGGTCCTTCACTGAAGTACGCCACGGCAAAGGTCAACA 5540 Query 36526 AGTCGAACCGGGG 36538 || | ||||| || Sbjct 5541 AGGCCAACCGTGG 5553 >seq6710 Length=1542 Score = 87.8 bits (96), Expect = 5e-13 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 24139 GTAGGACTCGAACCTACGACCTAGTGATTAAAAGTCACCAGCTCTACCAACTGAGCTAAA 24198 |||||||||||||||||||||| ||||||||||| ||||||||||||||||||| | Sbjct 1541 GTAGGACTCGAACCTACGACCTGCGGATTAAAAGTCCGTAGCTCTACCAACTGAGCTATA 1482 Query 24199 GGGGCG 24204 |||||| Sbjct 1481 GGGGCG 1476 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146599615054200