Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_030917.1 Length=93577 Score E Sequences producing significant alignments: (Bits) Value seq3754 540 6e-149 seq1862 185 5e-42 seq3603 122 5e-23 seq5118 116 2e-21 seq5807 87.8 1e-12 seq3838 86.0 4e-12 seq582 86.0 4e-12 >seq3754 Length=1683 Score = 540 bits (598), Expect = 6e-149 Identities = 510/650 (78%), Gaps = 8/650 (1%) Strand=Plus/Plus Query 78263 GTGTGGGATCGACTCACCGGCAACTTCTGGTTGCCCGAGAAGGTACCGGTGTCCAACGAC 78322 || |||||||| ||| | ||||||||||| ||||||| ||||| ||||| ||||||||| Sbjct 319 GTATGGGATCGCCTCGTCAGCAACTTCTGGCTGCCCGAAAAGGTGCCGGTCTCCAACGAC 378 Query 78323 ATCCCATCCTGGGACACCCTTACGCCGGAAGAGAAGGAACTCACTATGCGTGTGTTCACC 78382 ||||| ||||||| || || || || | ||| || | ||||| ||||| || ||||| Sbjct 379 ATCCCGTCCTGGGGAACGCTGACCGCGCAGGAGCAGCAGCTCACCATGCGCGTCTTCACG 438 Query 78383 GGCCTCACCCTGCTCGACACCATCCAGGGCACAGTTGGCGCCATCTCGCTCATCGCCGAC 78442 ||||| || |||||||||||||||||||| || || |||||| || |||||| | ||| Sbjct 439 GGCCTGACGCTGCTCGACACCATCCAGGGAACGGTCGGCGCCGTCAGCCTCATCCCGGAC 498 Query 78443 GCCAACACCCCGCACGAGGAGGCGGTGCTCACCAACATCGCGTTCATGGAGTCGGTACAC 78502 || | ||| || ||||| || |||||| |||||||||||| |||||||| ||||| ||| Sbjct 499 GCGATCACTCCCCACGAAGAAGCGGTGTACACCAACATCGCCTTCATGGAATCGGTGCAC 558 Query 78503 GCCAAGTCCTACAGCTCGATCTTCTCAACGCTATGCTCCTCCAAGCAGATTGACGAGGCG 78562 || ||| ||||||||||||||||| ||||| |||||| || | || ||||| ||| Sbjct 559 GCGAAGAGTTACAGCTCGATCTTCTCGACGCTGTGCTCCACCCCCGACATCGACGACGCG 618 Query 78563 TTCCGTTGGTCGGAGGAGAACGAGTACCTGCAGCGCAAGGCCCAGATCGTCCTGGACTAC 78622 ||||| ||||||||||||||| |||||||||||||||| |||||||| || |||||| Sbjct 619 TTCCGCTGGTCGGAGGAGAACCCCAACCTGCAGCGCAAGGCGCAGATCGTTCTCGACTAC 678 Query 78623 TACCGCGGCGACGACCCCTTGAAGCGGAAGGTGGCCAGTACGCTCCTGGAGGGCTTCCTC 78682 ||| |||||| || | ||||| ||||| || |||||||| ||| |||||||| Sbjct 679 TACAACGGCGAGTCGCCGCTCAAGCGCAAGGTCGCATCGACGCTCCTCGAGAGCTTCCTC 738 Query 78683 TTCTACTCGGGCTTCTACCTGCCGATGTACTGGTCGAGCCGCGCCAAGCTGACGAACACC 78742 |||||||| ||||||| |||||||| ||||||||| || |||||||| || |||||| Sbjct 739 TTCTACTCCGGCTTCTCCCTGCCGACGTACTGGTCCTCGCGAGCCAAGCTCACCAACACC 798 Query 78743 GCGGACGTGATCCGGTTGATTATCCGAGACGAAGCAGTTCATGGGTACTACATCGGATAC 78802 || ||| | ||||| | || ||||| ||||| || || || |||||||||||||| ||| Sbjct 799 GCAGACCTCATCCGCCTCATCATCCGCGACGAGGCTGTGCACGGGTACTACATCGGCTAC 858 Query 78803 AAGTACCAGCGAGGCCTCGA----GACCCAGGGGCCGGCGCGGCAGGCTGAGCTCAAGGA 78858 ||||||||| |||||||| | | | ||||| || | ||||||||| | Sbjct 859 AAGTACCAGAAGGGCCTCGAACAGCTCACCGAGGCCG----AGCGTGAAGAGCTCAAGAA 914 Query 78859 GTACACGTTCGATCTGCTCTCGGAGCTCTACGACAACGAGTGTGACTACA 78908 ||||||||||| |||||| ||||||||||| |||||| ||||||| Sbjct 915 CTACACGTTCGAGTTGCTCTTCGAGCTCTACGAGAACGAGGTCGACTACA 964 Score = 149 bits (164), Expect = 4e-31 Identities = 156/199 (78%), Gaps = 12/199 (6%) Strand=Plus/Plus Query 78965 TACAACGGCAACAAGGCGCTGATGAACCTCGGCTACGAAGCACTGTTCCCCAAGGAAGAG 79024 ||||||| |||||||||||| | || ||||||||||||| || ||||| ||||| ||| Sbjct 1012 TACAACGCCAACAAGGCGCTCAACAATCTCGGCTACGAAGGCCTCTTCCCGAAGGACGAG 1071 Query 79025 AC-CATGGCAGACCCGGCCATCATGTCCGCGCTCTCACC--AGGCGGCGACGAGAACCAC 79081 || | | || | ||||| ||| |||| || || ||||| | ||| |||||||| ||| Sbjct 1072 ACGGACGTCA-ATCCGGCTATCCTGTCGGCACTTTCACCGAATGCG--GACGAGAATCAC 1128 Query 79082 GACTTCTTCTCCGGGTCGG---GCTCGAGCTACGTCATCGGCAAAGCTGAAGCCACGGCA 79138 |||||||||||||| |||| |||| |||||||||||||||||| | ||| | | Sbjct 1129 GACTTCTTCTCCGGCTCGGGTAGCTC---CTACGTCATCGGCAAAGCCGTCAACACCGAA 1185 Query 79139 GATGAGGACTGGGACTTCT 79157 || || ||||||||||||| Sbjct 1186 GACGACGACTGGGACTTCT 1204 >seq1862 Length=5913 Score = 185 bits (204), Expect = 5e-42 Identities = 285/402 (71%), Gaps = 6/402 (1%) Strand=Plus/Plus Query 69613 GAGGACACACAATGGCAAATGACACCGTCATCACCGTCATCGGTAACCTGACCGCCGACC 69672 ||||| |||| |||| |||||| |||||||||||||||| |||||||| || || | Sbjct 5176 GAGGAACCACA-TGGCTGGCGACACCATCATCACCGTCATCGGAAACCTGACGGCTGATC 5234 Query 69673 CCGAACTCCGGTTCACGCCCTCCGGTGCCGCGGTCGCGAACTTCACCGTCGCGTCGACCC 69732 | ||||| || ||||| || | ||||||||||| || |||||||| || || || || | Sbjct 5235 CTGAACTTCGTTTCACCCCGGCGGGTGCCGCGGTTGCAAACTTCACGGTTGCTTCCACGC 5294 Query 69733 CGCGGTACTTCGACAAGCAGTCGAACGAGTGGAAGGATGCCGAGGCACTCTTCCTGCGCT 69792 | || ||||||| | || || || ||||| || | ||| || || ||| |||| | Sbjct 5295 CCCGTACCTTCGACCGTAATTCCAATGAATGGAAAGACGGCGATGCGCTGTTCATGCGTT 5354 Query 69793 GCAACGTCTGGCGCGAGTACGCCGAGAACGTGACTGAGTCGCTCCAGAAG-GGCGCCCGC 69851 ||||| |||||||||| ||||||||||| | ||| ||| | | || | || Sbjct 5355 GCAACATCTGGCGCGAAGCAGCCGAGAACGTCGCGGAG-AGCTTGACCCGTGGTTCACGA 5413 Query 69852 GTCATCGTCCAGGGCAAGCTCAAGCAGCGGTCCTACGAGA---AGGATGGCCAGCCGCGC 69908 || ||||| ||| |||||||||||| || ||||| | || ||| | ||| Sbjct 5414 GTAATCGTGAGCGGCCGGCTCAAGCAGCGTTCGTACGAAACTCGCGAGGGCGAAAAGCGA 5473 Query 69909 ACCACCTTCGAGCTCGAGGTTGAGGAGATCGGCCCCGCACTCCGGTACGCCACCGCCCGG 69968 || | |||||||||| || || || ||||| || |||| ||||||||| || | Sbjct 5474 ACTGTCGTCGAGCTCGAAGTCGATGAAATCGGTCCTTCACTGAAGTACGCCACGGCAAAG 5533 Query 69969 GTCACCAAGTCACAGCGTGGCGGATTCGGTGGCGGCAACAAC 70010 |||| |||| | | ||||| || |||||| ||| |||| Sbjct 5534 GTCAACAAGGCCAACCGTGGTGGCGGCGGTGGAGGCGGCAAC 5575 >seq3603 Length=4408 Score = 122 bits (134), Expect = 5e-23 Identities = 261/380 (69%), Gaps = 10/380 (3%) Strand=Plus/Plus Query 42101 ATCGGCCTGATCACCG-CGGAGGGCAGCGACGCCGAGAAGGACGTCCTGAACGTCGCCCG 42159 |||||||||||||| | | ||| ||| | ||||||||||| ||| | ||||||| Sbjct 66 ATCGGCCTGATCACGGGCCGAGC-CAGTGCGGCCGAGAAGGATGTCGTCTCAGTCGCCCA 124 Query 42160 GGACCGATGGCC-GCACGTGCAGTTCAAGC-CGTACCACATCCCTGTGCAGGG-CCAAC- 42215 || ||||| ||| ||| | || |||| ||| | | || ||||| || || Sbjct 125 TCGTCGTTGGCCAGCAGTTGCCATCGCAGTGCGTAACAC--CGCGGTTCAGGGTCCGACT 182 Query 42216 GCTGCGCAGGACGTGCCACCGCCGCCCTGAAGGCACTGGATGCCGACCCCGAGGTTGACG 42275 |||| | | | || || || ||||||| ||| || ||| ||| | || |||| Sbjct 183 GCTGTTCCCCAGAT--CATCGAAGCGCTGAAGGAACTCGACGCCAACCTGGTAGTCGACG 240 Query 42276 TCATCATCTTCGCCCGCGGCGGCGGGTCCAACCAGGACCTCCTTCCCTGGTCCGACGAGG 42335 |||||||| |||| ||||||||||| | | |||| ||||| || | |||||||| | Sbjct 241 TCATCATCCTCGCTCGCGGCGGCGGTAGCGTCGAGGATCTCCTGCCGTTCTCCGACGAAG 300 Query 42336 GCCTCTCCCGGGCCGTGTTCGCCGCTAACACGCCCACGGTCAGCGCCATCGGACACGAGA 42395 || | ||| ||| | | ||| | ||||| | ||||| ||||||||||||||| Sbjct 301 CGCTGTGCCGCGCCATCGTGGCCTGCACGACGCCGATCGTCAGTGCCATCGGACACGAGC 360 Query 42396 ACGACAAGCCGATGCTGGACCGGGTTGTGGACCTGCGAGCTGCGACTCCGACAGATGCGG 42455 |||| ||| | |||| || | |||||||| || || || || || || |||| Sbjct 361 CGGACAGCCCGCTCAGTGACCACGTCGCCGACCTGCGCGCAGCCACACCCACGGACGCGG 420 Query 42456 CAAAACGTGTCGTACCCAAC 42475 | || || ||||||||| || Sbjct 421 CCAAGCGCGTCGTACCCGAC 440 >seq5118 Length=3284 Score = 116 bits (128), Expect = 2e-21 Identities = 161/222 (73%), Gaps = 4/222 (2%) Strand=Plus/Plus Query 55105 CGAGTTCGGCGGTCGGGTCTGCTACCAGAGCTGGGACAAGCCCAACCCGAAGACGGCCAC 55164 ||||||| |||||| | |||||||||||| ||| |||||| || ||| || || || Sbjct 475 CGAGTTCTCCGGTCGAGCCTGCTACCAGAGTTGGTCCAAGCCGAATCCGCGAACCGCAAC 534 Query 55165 CAACCAGGGCTACATCGAGAACATC--CAGGAGCAGCGCCACTTCAGCGTGCTCGAGCAC 55222 |||| ||||| | ||| |||| | ||| | ||| | ||||||||||| Sbjct 535 CAACGCCGGCTATCT-GAGG-CATCTGCTCGAGGTCGGACACGTTTCGGTGCTCGAGCAT 592 Query 55223 AGCTCGGCCAGCTTCTACATCGAAGGTGTCTCCCGGTCGCTCACCCACGAGTTGGTGCGC 55282 | | |||||||||||| ||| |||| || ||| ||| ||||| ||| | || Sbjct 593 GCGACAGTGAGCTTCTACATCACCGGTATCTCGCGCTCGTGCACTCACGAATTGATTCGT 652 Query 55283 CACCGCCACTTCTCGTACTCGCAACTGTCGCAGCGCTACGTC 55324 ||||| |||||||||||||||||||| |||||||| | |||| Sbjct 653 CACCGGCACTTCTCGTACTCGCAACTCTCGCAGCGATTCGTC 694 >seq5807 Length=961 Score = 87.8 bits (96), Expect = 1e-12 Identities = 60/68 (88%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 5357 GTAGCTCAATTGGCAGAGCGTCCGACTGTTAATCGGATGGTTGAAGGTTCGAGTCCTTCC 5416 ||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||| || Sbjct 498 GTAGCTCAATTGGCAGAGCTTCCGACTGTTAATCGGACGGTTGCTGGTTCGAGTCCAGCC 557 Query 5417 GTCGGAGC 5424 | ||||| Sbjct 558 GGGGGAGC 565 >seq3838 Length=2938 Score = 86.0 bits (94), Expect = 4e-12 Identities = 60/67 (90%), Gaps = 1/67 (1%) Strand=Plus/Plus Query 4263 GGGCGTAGCTCAATTGGAAGAGCAGCGGTCTCCAAAACCGCCGG-TGTAGGTTCGAGTCC 4321 ||||||||||||| ||| ||||||||||||||||||||||| || || |||||| ||||| Sbjct 1706 GGGCGTAGCTCAACTGGCAGAGCAGCGGTCTCCAAAACCGCAGGTTGCAGGTTCAAGTCC 1765 Query 4322 TGCCGCC 4328 || |||| Sbjct 1766 TGTCGCC 1772 >seq582 Length=79996 Score = 86.0 bits (94), Expect = 4e-12 Identities = 106/145 (73%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 45294 CTGCCGTTCATCCATCCGCACGTGGCGCTGATGCCGGATGCTCACAGCGGCAAGGGGTCC 45353 ||||| || | |||||||||||| | ||||| || | || ||||| || || Sbjct 74546 CTGCCCATCGTTTATCCGCACGTGGTGGCCATGCCCGACGTGCATGCCGGCATCGGCGCC 74605 Query 45354 GCGGTCGGCACTGTGATCCCGACCGTCGATGCGGTGATCCCCGCGGCGGTCGGCGTCGAC 45413 | ||||||| ||||| || || || || || ||||| || || || ||||||||| Sbjct 74606 ACCGTCGGCAGCGTGATTCCCACGCGCGGCGCCGTCATCCCGGCCGCCGTGGGCGTCGAC 74665 Query 45414 ATCGGCTGCGGCATGATCGGCGTGC 45438 |||||||||||||||| || ||||| Sbjct 74666 ATCGGCTGCGGCATGAACGCCGTGC 74690 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 299270510012090