Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_030918.1 Length=36629 Score E Sequences producing significant alignments: (Bits) Value seq523 289 7e-74 >seq523 Length=83696 Score = 289 bits (320), Expect = 7e-74 Identities = 559/814 (69%), Gaps = 28/814 (3%) Strand=Plus/Plus Query 979 GCTATGTTTATGCCCTAAGTCACGTTAGACACCCCaaaaaaaCCACCCTGCACGGTGGTT 1038 ||||||||||||||||| || |||||||||| ||||||||| ||||||| |||||||| Sbjct 49468 GCTATGTTTATGCCCTAGGTAACGTTAGACATCCCAAAAAA-CCACCCTTGCCGGTGGTT 49526 Query 1039 GAGATGGAACG-TAGGCATGAACAGAACCGAAATACCCCGCGACAACAACGTCCGCTGGG 1097 || | ||| |||||||||||| ||||||||| || | ||| | | | || |||| Sbjct 49527 ATGAATGGACGCTAGGCATGAACAAAACCGAAATCCCGCTTGACCCAACCCTGCGATGGG 49586 Query 1098 AGTGGATCAAATACCAGCTCCGCGCCAGGGGTTCGTCCCTGGCCGAGGTGGCCCGCTCCC 1157 | |||||||||||||| || || || | ||| |||| || || |||| || | Sbjct 49587 AATGGATCAAATACCAACTTCGTACCCGAGGTACGTCACTCGCAATCTTGGCGCGTGAAC 49646 Query 1158 TCGACGTATCCAGCC-CGGCAGTCAAAAACGCCAAGCTGAATCCCTACCCTCGGGTAGAG 1216 | ||||| | ||| | || ||||| ||||| |||| | | || || || | ||| Sbjct 49647 TTGACGT-TACAGATGCTGCCGTCAAGAACGCTAAGCGCACCGCATATCCGCGAATGGAG 49705 Query 1217 CGCGCCATCGCCGCTGTGCTCGACCTCAGCCCCCTGGTGCTGTGGCCTGAGCGCTGGCTC 1276 || || || ||| || ||| | ||||| || | | ||||||| || || ||| | Sbjct 49706 CGAGCTATTGCCCGTGCGCTAGGCCTCAAGCCAATCGACTTGTGGCCCGAACGTTGGAAC 49765 Query 1277 GACGACGAGAATCCGAAGCGGCAACGGCCCAATCGTTCGGAAACCCTCAAGGCATATGAC 1336 | ||| | || | || ||| | || | ||| | ||| ||| | Sbjct 49766 GCAAACGGCACCCCACACCGTATTCGGGTGCAGCGCGCAGAA---CACAACGCAACT--- 49819 Query 1337 AGTGTCATATGCCGATCCGGGAAAAATAACAGATACGCTGA--CCAAGCG-CAGCGTAAA 1393 || || ||| | | ||||| | ||| | || || || |||||| Sbjct 49820 ----TC-TA-GCCAAG------AGCATAACCCA---GCTTATGCCCTTCGACACCGTAAA 49864 Query 1394 GCCGACGCGGGGGCTTGAACATGGCCCGCCGCAAAGACGACCGCACCCTGGACATCTTCG 1453 ||| | ||| || | |||||| ||| || || || || || | ||||||||| Sbjct 49865 ACCGGCACGGAGGTATAAACATGCGCCGTGTAAAGGATGATCGTACGTTAGACATCTTCT 49924 Query 1454 ATGTTCCGCAGCCAGCTCGCGCTATACCCGGTGAGTGCAACTACGCCGCCCAGGTCAGCG 1513 ||| || ||||||| || ||||| || || | ||||| | ||||| |||||||| | Sbjct 49925 CTGTCCCACAGCCAGTTCTGGCTATCCCAGGGAATGGCAACAATGCCGCACAGGTCAGTG 49984 Query 1514 AACTGGTCAGCGAAATACTGAAGGCCGCCAACCTCGACCGTTACGAGATTGCCGCCCGCA 1573 ||||| ||||||| || ||||| | || | || ||||||||||| |||| || |||| Sbjct 49985 AACTGATCAGCGAGATTCTGAAAGGTTCCGATCTGGACCGTTACGAAATTGGTGCACGCA 50044 Query 1574 TGTCGCGCCTCTCCGGCGATGACGTGAGCAAGAACATGCTCGACGCCTGGTCGAGTCCCG 1633 |||| ||| | || |||||||||||||| ||| ||||||| ||||| |||||||| || | Sbjct 50045 TGTCTCGCTTGTCTGGCGATGACGTGAGTAAGCACATGCTTGACGCGTGGTCGAGCCCAG 50104 Query 1634 CCCGAGTTGATCACAACTTGCCTTTCTACCGCGCCGCCCTCCTGGAAGACGTCTGCGCGA 1693 ||||| || || ||| |||| ||||| | ||| | || || ||||| || || | Sbjct 50105 CCCGAACAGACCATAACCTGCCGTTCTATAGAGCCCCACTGCTTGAAGAAGTTTGTAGCA 50164 Query 1694 GCCACCTGCTGACCAACTGGCTGGTCGATGTGCGGGGTGGCCGCGTGGCCTATGGCCGAG 1753 | ||| | | ||| |||||||||| || || |||||||||||||| || || || | Sbjct 50165 GTCACGTTTTAACCGACTGGCTGGTTGAGCAACGTGGTGGCCGCGTGGCTTACGGTCGCG 50224 Query 1754 ACGCACTGCTCGCCGAACTGGGCCGCCTGGAGCG 1787 | ||||| ||| || || || || |||| ||| Sbjct 50225 ATGCACTCAACGCGGAGCTTGGTCGTCTGGCGCG 50258 Score = 150 bits (166), Expect = 4e-32 Identities = 479/727 (66%), Gaps = 48/727 (7%) Strand=Plus/Plus Query 8839 CATTGAGCGAAACCGCCCCGGCCTTGCCGGGACGGTCTGCCGGACGTGGTGGTCCGGTAC 8898 |||| ||||||| ||||||||| || ||| |||||||||||||||||| ||||||||| Sbjct 56889 CATTAAGCGAAATCGCCCCGGCGC-GCTGGGGCGGTCTGCCGGACGTGGTTGTCCGGTAC 56947 Query 8899 TGATGAGCAGCCACCCATGACGAACGAA--ACCAAGACAGACCGCCAGCGGCGCCTGGCG 8956 ||||||||||||||||||||| ||||| ||| | |||| ||| | |||||||| Sbjct 56948 TGATGAGCAGCCACCCATGACAGACGAAACACCCAAACAG--CGCAAAACCCGCCTGGCA 57005 Query 8957 CGGGAACGCCAACGGGCGAAGCGCGAGCGCGATGCCCTGCGTC--GCGC--TGCGCTGGG 9012 | || || |||| || ||||| ||||||| | ||| | |||| || |||| Sbjct 57006 TGCGAGCGTAAACGTGCCCAGCGCAAGCGCGA----CAGCGACAAGCGCCTGGCCATGGG 57061 Query 9013 CGGCCGCCGCTTCAACATGGACATGTACCAGGGAACGGCTGATGCACTCGATCTGATCTG 9072 | | || |||| ||||| || ||| || || | | || || | |||| | Sbjct 57062 TGCCAGCAAGCTCAAGATGGAAATCTACAGCGGCACCCAAAACGAGCTGGAACAGATCCG 57121 Query 9073 CGCGGCCGGTGGCTTCGCCGAGCCGGCCGAGGCGGTCACCTTGCTCCTACACAACGTTGC 9132 | | |||||| |||| ||| | | | | || |||| || | | || || || Sbjct 57122 CACCGCCGGTAAGTTCGACGAAACAGACCATGCACTCACGATGACCATTCATGGTGTCGC 57181 Query 9133 CGAAAT-TGCAGAGCGTGACGCGTCA-CGTTTTGCCGAGT--TGATCCAAAAGAGAAGCC 9188 | | | | || | ||| || || |||| || || |||| |||| ||| | Sbjct 57182 TGCGTTGTCCCGAAC-CGACCCGGCAGCGTT---CCAGGTACTGAT-CAAAGGAGGA--- 57233 Query 9189 ATCCAGGGAGGACCAAGCGATGAGCCTACGCGCCGTCAACCTCGCAAAAATCCACATCGC 9248 | ||| ||||| || | ||| || | | | || ||||||||||| Sbjct 57234 AGACAG---TGACCACACG--TAACCT----GCAATTGAGC-----AAGATCCACATCGC 57279 Query 9249 CAAGGCCCAGCTGGGCATGGACGATGACACCTATCGCGCATTGCTGGCTCGCGTCGCGGG 9308 |||| | || || |||| || || ||||| || || ||| ||| ||||| ||||| Sbjct 57280 CAAGAAGGACCTTGGGCTGGATGACGAAACCTACCGGGCCTTGTTGGGCCGCGTGGCGGG 57339 Query 9309 CGTGCGCTCGGCCAAGGACTTAGGGCCGCGCCAGATCGACCACGTACTGGTCGAACTCCA 9368 ||||| |||||||| ||| | ||| |||||||||| | ||||||| ||| | Sbjct 57340 TGTGCGTTCGGCCAAAGACCTGACGCCACGCCAGATCGGCGCTGTACTGGCCGAGTTTGC 57399 Query 9369 GCGCCTGGGCTGG------AAACCGAAGAGCAACCGGCAGGGCCGGGCGACGCCAAAAGT 9422 ||| |||||||| ||||||| | || ||| ||||| | || | | Sbjct 57400 CCGCTTGGGCTGGGAGTCTAAACCGACTAAAAA---GCAAGGCCGCAAGGGACCGATGGC 57456 Query 9423 GCCGCAAAACCGGCAAACCGTGCTGCGCAAAATCACCGCGCTCCTGGCCAGCGCCCATCG 9482 | ||| | ||||| || || || | ||||| || | || ||| ||| | || Sbjct 57457 GGCGCCAGACCGGGTAAAGCTGGTGGGTAAAATAGAGGCTTTTCTCGCCGAGGCCAAACG 57516 Query 9483 CCCCTGGAGCTACGCCGACCACATGGCCCGGCGCATGTTCCAGGTCGAGCGGGTCGAGTG 9542 | ||||| || |||||| ||||||| |||||||||| |||||||||| || || || Sbjct 57517 CTCCTGGGCATATGCCGACGGTATGGCCCTGCGCATGTTCAAGGTCGAGCGAGTGGAATG 57576 Query 9543 GCTGGAC 9549 ||| ||| Sbjct 57577 GCTAGAC 57583 Score = 129 bits (142), Expect = 1e-25 Identities = 213/302 (71%), Gaps = 4/302 (1%) Strand=Plus/Plus Query 295 GATCTGCCGCTGGACGCGCTTGGCGTACAAGTGGTCATCCAGGCGGATGACGTAGACAGC 354 || ||||||||||| | || || || | ||||||||||| ||||||||||| ||||| Sbjct 48766 GAACTGCCGCTGGAGCCTTTTCGCATAGAGATGGTCATCCAGCCGGATGACGTATACAGC 48825 Query 355 TTCGTCACGAACCTCATTGCAACTGTGGTCAATCATCACCGTATCGCCATCGCTCAACAG 414 || | || | ||| ||||||||||||||||| |||||||||||||| | || Sbjct 48826 CTCTCCCTCAAGCGAGCTGCGGCTGTGGTCAATCATCACAGTATCGCCATCGCTTAGAAG 48885 Query 415 TGGCTCCATTGAGTCACCGCCGATGCGGACGGCCGACATATTCGCGATCTCCAGGCCTTG 474 | |||||| || || ||| | | |||| || |||| ||| ||||||||||| Sbjct 48886 TCCCTCCATCGAATCCCCGTCCACTCGGATTGCGGACAGTCGCGCAGAGTCCAGGCCTTG 48945 Query 475 CTTCCGCAAGC-TGTA-GCGAGTGAATGCCAACTGAGCGAGTATCTGCGCCCCCTCTGTC 532 ||| || |||| ||| ||| ||||| || | ||| | || | ||||| || || Sbjct 48946 CTTGCG-AAGCGAGTACGCG-GTGAACGCAAGCTGGGTTAGGACAGTAGCCCCTTCGCTC 49003 Query 533 CAGGAGCCGTGACCAGCGCGCACCCGAGCGTCATACAGAGGGATATAGGCGTAATTGTCG 592 |||| |||||| || || | | ||||| |||| ||| | || ||||| ||||| Sbjct 49004 CAGGCGCCGTGTCCCGCACTACAGTGGGCGTCGTACAAAGGCACGTAAGCGTACTTGTCC 49063 Query 593 TC 594 || Sbjct 49064 TC 49065 Score = 100 bits (110), Expect = 7e-17 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 6380 GCCTGGGGCGAGCGTCCGCCCGTCTTCGTCCAGCTGCTCGCCGCTGAGGTGGCCCGCAGC 6439 || |||||| || |||| | ||||| | ||||||||||| || || || || | Sbjct 53731 GCTTGGGGCCAGGACGCGCCGTTGTTCGTACGCCTGCTCGCCGCCGAAGTCGCTGCCACC 53790 Query 6440 AGCCAGACGAAGGCCGGCGAGGCAATCGGCATGAGCCGTTCGACCGTCAGCACCATCCTC 6499 | | |||| |||||| || || |||||||||||||| || |||||||| | ||| Sbjct 53791 AACAAGACCAAGGCCAGCCAGCGTATCGGCATGAGCCGCACGGCCGTCAGCCTGACCCTT 53850 Query 6500 GCCAACCGCTACCCGTCGCCCTCGACGATCCGCGTCGAGCGTCGTGTCCTGGCCGCGCTG 6559 |||||||||| |||||||| | | | || ||||| || || ||| | ||| Sbjct 53851 TCCAACCGCTATGCGTCGCCCAGCATGGCGGGTGTTGAGCGGCGGGTAATGGAAACCCTG 53910 Query 6560 AGCCGCATTGAGTGCCCGGCCCTGGGCGAGGCGGTGACCTCGGTCGAGTG 6609 | |||||||| || ||||||| |||| | || ||| ||| | |||| Sbjct 53911 GGGCGCATTGAATGTGTCGCCCTGGACGAGACCGTTACCACGGACCAGTG 53960 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 117071726635710