Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_030919.1 Length=42418 Score E Sequences producing significant alignments: (Bits) Value seq24 978 0.0 seq816 100 8e-17 seq1130 87.8 5e-13 seq2164 86.0 2e-12 >seq24 Length=857 Score = 978 bits (1084), Expect = 0.0 Identities = 638/702 (91%), Gaps = 0/702 (0%) Strand=Plus/Plus Query 21107 GTGGCGGGGCTATTGCCATAGCATCTGTGTTAATCACTGGCCCCGGTGGTAACGATGGTC 21166 ||||||| || ||||| |||||||| ||||||||||||||||| ||||||||||||||| Sbjct 17 GTGGCGGAGCAATTGCTATAGCATCAGTGTTAATCACTGGCCCAAGTGGTAACGATGGTC 76 Query 21167 TGGAAGGTGTCAGATACAAACCATACAAGGACGTAGTTGGTGTGTTGACTGTGTGTTATG 21226 ||||||||||||| |||| ||||||||| || | |||||||| | |||||| ||| | | Sbjct 77 TGGAAGGTGTCAGCTACATACCATACAAAGATATTGTTGGTGTATGGACTGTATGTCACG 136 Query 21227 GCCACGTCGGAAAAGACATCATGCTCGGTAAAACGTATACCGAAGCAGAATGCGAAGCCC 21286 | || ||||||||||||||||||||||||||||||||| ||||||||||| |||||| Sbjct 137 GGCATACAGGAAAAGACATCATGCTCGGTAAAACGTATACCAAAGCAGAATGCAAAGCCC 196 Query 21287 TCCTGAATAAAGACCTTGCCACGGTCGCCAGACAAATTAACCCGTACATCAAAGTCGATA 21346 ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| Sbjct 197 TCCTGAATAAAGACCTTGCCACGGTCGCCAGACAAATTAACCCGTACATAAAAGTTGATA 256 Query 21347 TACCGGAAACAACGCGCGGCGCTCTTTATTCGTTCGTCTATAACGTGGGCGCAGGCAATT 21406 |||||||||||||||||||||||||||| |||||||| || ||||||||||| ||||||| Sbjct 257 TACCGGAAACAACGCGCGGCGCTCTTTACTCGTTCGTTTACAACGTGGGCGCTGGCAATT 316 Query 21407 TCAGAACATCGACGCTTCTTCGCAAAATCAACCAGGGCGATATCAAGGGCGCATGTGACC 21466 |||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| | Sbjct 317 TCAGAACATCGACGCTTCTTCGCAAAATAAACCAGGGCGATATCAAAGGCGCATGTGATC 376 Query 21467 AGCTACGTCGCTGGACATACGCTGGCGGTAAGCAATGGAAAGGGCTGATGACTCGCCGTG 21526 ||||||||||||||||||| ||||||||||||||||||||||| || |||||||| |||| Sbjct 377 AGCTACGTCGCTGGACATATGCTGGCGGTAAGCAATGGAAAGGTCTCATGACTCGTCGTG 436 Query 21527 AGATTGAGCGTGAAGTCTGTTTGTGGGGGCAGCAATGAGCAGAGTAACCGCGATTATCTC 21586 |||||||||||||| ||||||||||||| ||||||||| ||||||||||||||||||||| Sbjct 437 AGATTGAGCGTGAAATCTGTTTGTGGGGTCAGCAATGAACAGAGTAACCGCGATTATCTC 496 Query 21587 CGCTCTGGTTATCTGCATCATCGTCTGCCTGTCATGGGCTGTTAATCATTACCGTGATAA 21646 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 497 CGCTCTGGTTATCTGCATCATCGTCTGCCTGTCATGGGCTGTTAATCATTACCGTGATAA 556 Query 21647 TGCAATCGCCTACAAAGAGCAGCGCGATAAAAAAGTCAGTGAACTGAAGCAGGCGACCGC 21706 || || ||||||||| |||||||| ||||| | ||| |||||||||| ||||| ||| Sbjct 557 CGCCATTACCTACAAAGCCCAGCGCGACAAAAATGCCAGAGAACTGAAGCTGGCGAACGC 616 Query 21707 CACCATTACTGACATGCAGCAGCGCCAGCGTGATGCTGATGCACTCGATGCTAAATACAC 21766 | ||||||||||||||| |||||||||||||| || |||||| |||| |||||||| Sbjct 617 GGCAATTACTGACATGCAGATGCGCCAGCGTGATGTTGCTGCACTGGATGAAAAATACAC 676 Query 21767 GAAGGAGTTAGCTGATGCGAAAGCTGAAAATGATGCTCTTCG 21808 ||||||||||||| ||||||||||||||||||||||||| || Sbjct 677 GAAGGAGTTAGCTAATGCGAAAGCTGAAAATGATGCTCTGCG 718 >seq816 Length=14434 Score = 100 bits (110), Expect = 8e-17 Identities = 69/78 (88%), Gaps = 4/78 (5%) Strand=Plus/Minus Query 5127 CTCCATAAAACAAAACCCGCCGTAGCGAGTTCAGATAAAAGAAATCCCCGCGAGTACGAG 5186 ||||||||||||||||||||||||||||||||||||||||||||||| || ||| |||| Sbjct 11250 CTCCATAAAACAAAACCCGCCGTAGCGAGTTCAGATAAAAGAAATCCTCGTCAGTGCGAG 11191 Query 5187 GATG----TTATTGCTGC 5200 |||| | |||||||| Sbjct 11190 GATGCTGTTCATTGCTGC 11173 >seq1130 Length=54118 Score = 87.8 bits (96), Expect = 5e-13 Identities = 87/110 (79%), Gaps = 7/110 (6%) Strand=Plus/Plus Query 25671 TTTGAAGAGTTCCGCCTCTATCATCGCGACGAGAACGGCAAGATCGTCAAGACCAACGAT 25730 ||||||||||||||| | ||||| ||| | || ||||||||| ||||| ||||| Sbjct 37687 TTTGAAGAGTTCCGCATGTATCACCGCAAGGA---CGGCAAGATTATCAAGCTGGACGAT 37743 Query 25731 GA--TGTGCTCGATGCTACTCGCTACGGCTACATGATGCGCCGCTTCGCC 25778 || ||| ||| || || ||||||| |||||||||||||||||||||| Sbjct 37744 GACTTGTTGTCG--GCCACACGCTACGCCTACATGATGCGCCGCTTCGCC 37791 >seq2164 Length=1578 Score = 86.0 bits (94), Expect = 2e-12 Identities = 50/52 (96%), Gaps = 0/52 (0%) Strand=Plus/Plus Query 3317 ATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCAGTTAAA 3368 |||||||||||||||||||||||||||||||||||||||||||||| || || Sbjct 209 ATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTTCAA 260 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 135593445787800