Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_030929.1 Length=49033 Score E Sequences producing significant alignments: (Bits) Value seq215 441 2e-119 seq140 136 1e-27 seq60 136 1e-27 seq1130 122 3e-23 seq211 100 9e-17 >seq215 Length=48791 Score = 441 bits (488), Expect = 2e-119 Identities = 626/875 (72%), Gaps = 4/875 (0%) Strand=Plus/Plus Query 7045 CAATGAAGACCACGCCCACCTACAAGACGCTCCTCTCGCTTTCCTATGGGCTGCCTCCAG 7104 ||| |||||||| |||||||||| || || || || | ||||| | || || Sbjct 12335 CAACGAAGACCATGCCCACCTACTGGATGCAGACATCCGGATCATGTGGGCGTCGTCGAG 12394 Query 7105 CTTCACCAAGCAGGGGAGGACGGTACTGGGTCAGTGCGAAGAGGTGACGTTCCGCTGTGG 7164 |||| |||||||||| | || || |||| ||| ||| | || |||| ||| || Sbjct 12395 CTTCGCCAAGCAGGGTCGCACAGTCTTGGGCCAGGCCGAGCAAGTAGCGTTTCGCGCCGG 12454 Query 7165 AGCCTGGCAGAAGGGTAGGCAGGAACAGCAGATGATCCGTTGGTTCGGATACCTGCCGAG 7224 | |||||||| | | | ||| || |||||| ||||||||| | ||||| Sbjct 12455 CGGTTGGCAGAAAGCCATGATGGAGCAACAGATGCGTGATTGGTTCGGCGATGTGCCGGC 12514 Query 7225 GTTTCTGATCACCCTGGCTGCTGACTACTGCTCCCAGTGCTCCGACGCGGAGTTCTGCGC 7284 || | || ||||||||||| ||||||||| |||||||| |||| ||||||||||| Sbjct 12515 ATTCATCATTACCCTGGCTGCCGACTACTGCGCCCAGTGCAGCGACCTTGAGTTCTGCGC 12574 Query 7285 ATTGGTCGAGCATGAGCTCTACCACATCTGCCAAGAGCACAACCAATATGGCGAGCCCAA 7344 ||| ||||||| ||||| || ||| | || | | | || | || || | || Sbjct 12575 CTTGATCGAGCACGAGCTTTATCACCTGGCTCACGCGACCGACAAGTACGGTCAACCAGC 12634 Query 7345 GTTCACCGAGGAGGGCTTTCCAAAGCTGAAGCTCCGCGGGCATGACGTCGAGGAGTTCGT 7404 |||||| | || || || ||| | ||||| | || || ||||| || |||||||| Sbjct 12635 ATTCACCCAAGACGGTGCACCGAAGATCAAGCTGCAGGGCCACGACGTGGAAGAGTTCGT 12694 Query 7405 CGGCGTGGTGAGGCGGTACGGCCCAAGCAAGGACGTGCAGTATCTCATCGACGCTGCTAG 7464 ||| || || | || || || ||||| ||||| || | | || ||||| | Sbjct 12695 CGGTGTCGTCCGCCGCTATGGTGCAAGCCCTGACGTTCAAGCGTTGGTGGATGCTGCAAA 12754 Query 7465 CAGGCCTCCAGAGGTGGCCAAAATTAACATTTCGAGAGCCTGCGGTACGTGCCTGCTGAA 7524 ||| ||| | ||||||| ||| | |||||| |||| |||||||| || || ||||| | Sbjct 12755 CAGTCCTGCTGAGGTGGGGAAATTGAACATTGCGAGGGCCTGCGGAACCTGTCTGCTCAG 12814 Query 7525 GTCGGCAT-AGCCACGACAGGCCCATGACAGGAAGAAAAACGATGGCAACCCTGAACAGC 7583 ||||| | | | ||||||| | ||| ||| || || |||||| ||||||| | Sbjct 12815 ATCGGCCTGATTCTTGACAGGCTCTAGAC-GGATGAGAATTTATGGCAGCCCTGAAAAAT 12873 Query 7584 GACGTGAAGGCGTTCATCGTTCAGGCGCTGGCCTGTTTCGATACGCCATCCCAGGTTGCG 7643 || |||||| |||||||||||||||||||| || || || || ||||||||||| | | Sbjct 12874 GAGGTGAAGAGCTTCATCGTTCAGGCGCTGGCGTGCTTTGACACCCCATCCCAGGTGGTG 12933 Query 7644 GAATCGGTCAAGAAGGAATTCGGCATCGAGGTCAGTCGGCAGCAGATCGAGTCGCACGAC 7703 ||| | |||||||| |||| ||| | | ||| || || |||||| | ||| |||||||| Sbjct 12934 GAAGCCGTCAAGAACGAATACGGGGTTGTGGTGAGCCGCCAGCAGGTGGAGACGCACGAC 12993 Query 7704 CCGAACAAGGTGTGC-AGCAAGGGCCTTGCCGCGAAGTGGCGGATCCTCTTCGAGGACAC 7762 || ||| | || || | ||||| || || | ||||||| || ||| ||| | ||||| Sbjct 12994 CC-AACCAAGTCCGCGGGTAAGGGTCTGGCGGTGAAGTGGGTGACCCTTTTCCACGACAC 13052 Query 7763 CCGCAAGCGCTTCCGCGAGGAGATCGCCGACATCCCGATCGCCAACCGCGCCTACCGACT 7822 | | ||||| ||||| ||||||| ||| || |||||||| ||||||||||||| ||| || Sbjct 13053 CAGGAAGCGGTTCCGAGAGGAGACCGCAGAGATCCCGATTGCCAACCGCGCCTTCCGGCT 13112 Query 7823 GAGGGCATTGGGTCGGATGGCTGAGCGCGCCGAGGGCATGCGAAACATGGCCCTGGCTGC 7882 | | |||| ||| |||| | | |||||| |||||| ||| |||| ||| |||| Sbjct 13113 TCGTGGCCTGGGGCGGCTGGCCGGGAAGGCCGAGAACATGCGCAACCTGGCGCTGACTGC 13172 Query 7883 CCAGCTTTACGAGCAGGCCGCCAAGGAGTCGGGTG 7917 ||||||||||||||| || ||||| ||| |||||| Sbjct 13173 CCAGCTTTACGAGCAAGCAGCCAAAGAGACGGGTG 13207 Score = 159 bits (176), Expect = 1e-34 Identities = 279/410 (68%), Gaps = 4/410 (1%) Strand=Plus/Plus Query 4555 GGCGCGGAAGGCTATCGCCGAC--CGAGAGCGGCGGGAGATCAAGGTTCGGAAGGAGAGG 4612 |||||| ||||| | |||||| |||| ||| || |||||||||| || ||||||| | Sbjct 8483 GGCGCGCAAGGCCCTGGCCGACATCGAGCGCGCCG--AGATCAAGGTCCGCAAGGAGAAG 8540 Query 4613 CTGAAGAGTAAGGCGGATCACCTGCGCGAGGCTCAGCAGGCATTCAACGAATTCATTCGC 4672 ||||||| | |||||||||||| || | ||||||||||| || | | ||||| Sbjct 8541 CTGAAGAACAGGGCGGATCACCTCAAGGACACACAGCAGGCATTTAATGCCTGGGTTCGC 8600 Query 4673 CTGCGCGACGCCGACCAGCCGTGCATCAGTTGTGGCCGCCACCACGATGGGCAGTNNNNN 4732 || || || | | ||| ||| |||| || |||||||| || | || || | Sbjct 8601 GCCCGTGATGCGGCACTGCCATGCGTCAGCTGCGGCCGCCATCATGGGGGTCAATACCAC 8660 Query 4733 NNNNNNNNNNNNNGCACGGTTGCCGCCAGCCCAGAGCTTCGCTTCGAGCCGCTCAACGTC 4792 |||| || | || | ||||||||| | || |||||||| |||| | Sbjct 8661 GCCGGCCACTACCGCACTGTAGGAGCGAACCCAGAGCTGAGGTTTGAGCCGCTGAACGCC 8720 Query 4793 CACAAGCAGTGCGCCCCATGCAACAACCATAAGTCAGGCGACATCGTGAACTACCGGATC 4852 |||||||||||||| ||||||||||| ||||| || || | || ||||| ||| Sbjct 8721 TGGAAGCAGTGCGCCCCGTGCAACAACCACCTTTCAGGAAACCTCATCAATTACCGAATC 8780 Query 4853 AACCTGGTGCGCAAGATCGGCGCCGAGAACGTGGAGTGGCTGGAAGGCCCTCATGAGCCC 4912 || | | | ||||||| || || |||| ||||| ||||||||||||||| || Sbjct 8781 TCGCTCCTACAGAGAATCGGCGAGGAAAAAGTGGCATGGCTTGAAGGCCCTCATGAGGCC 8840 Query 4913 CTGAAACTGACCATCGAAGAAATCAAAGCGCTGAAGGCCCAGTTCCGGGC 4962 ||| ||| | || || | || ||| ||| ||| | | |||||| Sbjct 8841 AAGAAGTACACCGTGGATGAGTTGAAGGCGATGACCGCCGACTACCGGGC 8890 >seq140 Length=92187 Score = 136 bits (150), Expect = 1e-27 Identities = 208/291 (71%), Gaps = 4/291 (1%) Strand=Plus/Minus Query 31673 GGGCGACGGCTGGCGGTACCGCGGGCGCGGGCTGCTGCAGATCACCGGCCGGGCGAACTA 31732 ||| ||||||| |||||| || ||||| || | ||||| ||||| || |||||||| Sbjct 58400 GGGTGACGGCTTCAAGTACCGTGGCCGCGGCCTAATCCAGATTACCGGACGTGCGAACTA 58341 Query 31733 CCGCGCCGC-CGGCGACGGGCTGGGCCAGCCGCTGGAGCAGGAACCCGAGCTTCTCGAGC 31791 ||| || |||||| | ||||||| | |||| | || |||||||| ||||||| Sbjct 58340 T-GCGGCGTGCGGCGAGGCCCTGGGCCTGGACCTGGTCAATGAGCCCGAGCTGCTCGAGC 58282 Query 31792 AACCGGAGTGGGCGGCGATCTCGGCGGCCTGGTGGTGGGCCAGTCACGGCTTGAACGACC 31851 | || || |||||||| |||||||| |||| ||| || | ||| ||||| | Sbjct 58281 AGCCACAGCACGCGGCGATGTCGGCGGCGTGGTTCTGGTCCTCCCGCGGACTGAACACAC 58222 Query 31852 TGGCCGACCGCGGCGAGTTCGCCGCC-ATCACTCGGCGCATCAACGGCGGCACGAACGGC 31910 |||| || | ||||| || || | |||||| |||||||||||| || || ||||| Sbjct 58221 TGGCAGATCAAGGCGATTT-GCTGAAGATCACTAAGCGCATCAACGGTGGTACCAACGGA 58163 Query 31911 CAGGCGGAGCGCCTGGCGCTGTGGGAGCGGGCGAAGAGGGTGCTGTCGTGA 31961 | ||| || || | |||||||| | |||| || ||||||| ||||| Sbjct 58162 CTGGCCGACCGTCAGGCGCTGTATGGCAAGGCGCTGAAGGTGCTGGCGTGA 58112 Score = 84.2 bits (92), Expect = 7e-12 Identities = 122/168 (73%), Gaps = 6/168 (4%) Strand=Plus/Minus Query 31332 ATGCCCATCACTGAGCAGCAGTTGCTGCATATCCTCCCGAACGCCGGCTCG-AGGGCCGG 31390 ||| | |||||||||||||| ||||||| ||||||||||||||||| ||| || ||||| Sbjct 58645 ATGTCGATCACTGAGCAGCAACTGCTGCAGATCCTCCCGAACGCCGG-TCGCAGTGCCGG 58587 Query 31391 CGTTTTTGTTGGTGCGCTGAACCGCGGGATGACGCGCTTCGGTATCACGTC--GCCTGTG 31448 |||||| ||| |||| | || | ||||| || | | || |||| | | || Sbjct 58586 CGTTTTCGTTCCTGCGTTAAATACGGCCATGACCCGGTATGCCAT--CGTCAATCGTCTG 58529 Query 31449 CGCGCGGCGACGTTCCTCGCCCAGGTCGGCCACGAAAGCGGCCAGTTG 31496 ||| || | ||| ||||||||||||| || || ||||| ||| Sbjct 58528 CGCATCGCCGCCTTCATCGCCCAGGTCGGTCATGAGTCAGGCCAATTG 58481 >seq60 Length=244765 Score = 136 bits (150), Expect = 1e-27 Identities = 322/478 (67%), Gaps = 34/478 (7%) Strand=Plus/Plus Query 41483 CCGTCGTCGTCC------TCGCCGCGAGTGGTGATGTTCAGCAGTGCGGACAGCACGTAA 41536 ||||||||||| |||||| || |||||||||||||| || ||| |||||| Sbjct 238526 CCGTCGTCGTCGCGGATATCGCCG---GTCGTGATGTTCAGCAGCGCACACATCACGTAG 238582 Query 41537 CGCTTGCCGTAGCTGACCGATGATCCAAGAGACTGAACGGCGTTCTTGCTGCCACTT--- 41593 |||||||| ||| | |||||| |||| || ||| ||| || |||| || || Sbjct 238583 CGCTTGCCATAGGTAGTCGATGAGCCAACAGCCTGTACGTCG---TTGCGACCTTTTCCG 238639 Query 41594 GTGTCTAGCGGAACGAGCATCGTCGTCTGCTCTCGGTGTCCGGCGCAGTGCATCAGAATT 41653 | || | ||| | | ||| || || ||||| ||||| || | | |||||||| ||| Sbjct 238640 ATATCAATCGGCAGGCTCATGGTGGTTTGCTCGCGGTGGCCACCCCGGTGCATCAAGATT 238699 Query 41654 CCAGTAAC-CGAAACGCCAGTCTGAACAGTCTCGACGCGGAAGCTCACTGCGAAACCGAA 41712 ||||| || | | |||| | | | | | || || |||| | | || || ||| Sbjct 238700 CCAGTGACACTGATCGCC-TTTTCAGCGTTTTCCACCTTGAAGGTGATGGCAAACCCGTG 238758 Query 41713 CCGCTGCATGATCGGCTTCACGATGTCGTTGATGTCTTCGAAGGTCGCGTAGTTGCTGCG 41772 | |||||||||||||||||| | ||| |||||| |||| || |||||| | | | Sbjct 238759 CTGCTGCATGATCGGCTTCAAGGTGTGTGTGATGTGGTCGAGCGTGGCGTAGGAGTTTCC 238818 Query 41773 CTTTTGGCCGTTGACGGTGATAGCG-CCACGCTCGGCAATGNNNNNNNNTTCGCTTTGCA 41831 | || ||| |||| || ||| |||| ||| | || |||| Sbjct 238819 TGTGTGTAGGTTAACGGCACCTTCGAACACAGTCGG-GATG---------TTGCACTGCA 238868 Query 41832 TGGCGGCCATGGATGCGTTGAACTCAGCCT-CTGCGCTGC--GGGACTGCATCCGTTCGT 41888 | ||||||| | || ||||| ||| | || ||| | ||||||||| || |||| Sbjct 238869 TTTCGGCCATTGCGGCATTGAA---AGCTTGCTCAGCTTCCTTGGACTGCATGCGCTCGT 238925 Query 41889 GCATGGCCATAAGCCGCTCCATCTTCTCGATGTCGCACGCAGGGTCAGCAGCGGCACG 41946 ||||||||| || ||||||||||||||||||||||| | || || || || ||||| Sbjct 238926 GCATGGCCAGCAGGCGCTCCATCTTCTCGATGTCGCAGGTTGGATCGGCGGCAGCACG 238983 >seq1130 Length=54118 Score = 122 bits (134), Expect = 3e-23 Identities = 208/294 (71%), Gaps = 12/294 (4%) Strand=Plus/Plus Query 31674 GGCGACGGCTGGCGGTACCGCGGGCGCGGGCTGCTGCAGATCACCGGCCGGGCGAACTAC 31733 ||||||||| ||| | | || || || || |||||| | |||||||| || |||||| Sbjct 53043 GGCGACGGCGTGCGCTTCAAGGGCCGTGGCCTACTGCAGGTGACCGGCCGCGCCAACTAC 53102 Query 31734 CGCGCCGCCGGCGACGGGCTGGGCCAG---CCGCTGGAGCAGGAACCCGAGCTTCTCGAG 31790 ||| ||| | | |||||||| | | ||||| |||| |||||||| |||||| Sbjct 53103 GCTGCCTGCGGTAAGGCGCTGGGCCTGGATCTGCTGGC-CAGG--CCCGAGCTGCTCGAG 53159 Query 31791 CAA-CCGGAGTGGGCGGCGATCTCGGCGGCCTGGTGGTGGGCCAGTC--ACGGCTTGAAC 31847 ||| ||| | | || |||||| | ||||| ||| ||| | |||| | ||| Sbjct 53160 CAAACCGTCAACGCCTGCCG-CTCGGCTGGCTGGTTCTGG--CAGGCGAACGGGCTCAAC 53216 Query 31848 GACCTGGCCGACCGCGGCGAGTTCGCCGCCATCACTCGGCGCATCAACGGCGGCACGAAC 31907 | |||||||| ||||| | | || |||||| ||||||||||||||||| Sbjct 53217 GCGCTGGCCGATGCAGGCGACCAGGTGAAGGTAACGCGGCGCGTCAACGGCGGCACGAAC 53276 Query 31908 GGCCAGGCGGAGCGCCTGGCGCTGTGGGAGCGGGCGAAGAGGGTGCTGTCGTGA 31961 |||| ||| |||||||||||||||| | | ||| ||| |||||||| ||||| Sbjct 53277 GGCCTGGCCGAGCGCCTGGCGCTGTTCGCGGTGGCCAAGCGGGTGCTGGCGTGA 53330 >seq211 Length=76543 Score = 100 bits (110), Expect = 9e-17 Identities = 196/286 (69%), Gaps = 8/286 (3%) Strand=Plus/Plus Query 31674 GGCGACGGCTGGCGGTACCGCGGGCGCGGGCTGCTGCAGATCACCGGCCGGGCGAACTAC 31733 ||||| ||| | ||| ||||| ||||| ||| | ||||||||||||||| |||||| Sbjct 34199 GGCGATGGCCAGAAGTATCGCGGCCGCGGCCTGATCCAGATCACCGGCCGGCGCAACTAC 34258 Query 31734 CGCGCCGCCGGCGACGGGCTG---GGCCAGCCGC---TGGAGCAGGAACCCGAGCTTCTC 31787 | || | | | | ||| ||| | || || ||| |||| ||| | || Sbjct 34259 CTGGCGTGCAGTCAGGCACTGTTCGGCGATGAGCGTTTGTTGCACCAACCGGAGTTGCTG 34318 Query 31788 GAGCAACCGGAGTGGGCG-GCGATCTCGGCGGCCTGGTGGTGGGCCAGTCACGGCTTGAA 31846 ||| ||| | |||||| |||| || || || |||| ||| | | |||||||| Sbjct 34319 GAGACGCCGCAATGGGCGTGCGAA-TCTGCCGCGTGGTTCTGGCAGCGCAATGGCTTGAA 34377 Query 31847 CGACCTGGCCGACCGCGGCGAGTTCGCCGCCATCACTCGGCGCATCAACGGCGGCACGAA 31906 ||| ||||| |||| | | ||||| || | ||||| ||||||||||| || ||| || Sbjct 34378 CGAGCTGGCTGACCAGGACCAGTTCACCACGATCACCCGGCGCATCAATGGTGGCCTCAA 34437 Query 31907 CGGCCAGGCGGAGCGCCTGGCGCTGTGGGAGCGGGCGAAGAGGGTG 31952 ||| | || | | || || ||||||| |||||||||| |||| Sbjct 34438 CGGTCTGGAGAACCGTATGCAACTGTGGGCGCGGGCGAAGGCGGTG 34483 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 156757925350950