Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_030931.1 Length=41871 Score E Sequences producing significant alignments: (Bits) Value seq215 109 1e-19 >seq215 Length=48791 Score = 109 bits (120), Expect = 1e-19 Identities = 280/424 (66%), Gaps = 3/424 (1%) Strand=Plus/Plus Query 17643 CGAGCGGCGCGAGATCGCGGTTCGGAAAGAGAAGTTGAAGAGCCGTGCAGACCACTTGAG 17702 |||||| ||||||| ||| || || |||||| |||||| | | || || ||| | | Sbjct 8507 CGAGCGCGCCGAGATCAAGGTCCGCAAGGAGAAGCTGAAGAACAGGGCGGATCACCTCAA 8566 Query 17703 GGAGGCCCAGGCCGCATTCAACGAGTTCATCCGCTGGCGAGACTGGGACCGCCCCTGCAT 17762 ||| | ||| ||||| || | | | ||| || || || | || ||| | Sbjct 8567 GGACACACAGCAGGCATTTAATGCCTGGGTTCGCGCCCGTGATGCGGCACTGCCATGCGT 8626 Query 17763 TAGTTGTGGCCGCTTTCATGATGGGCAGTATCACGCCGGTCATTACCGCTCTGTTGGATC 17822 || || |||||| ||||| || || || |||||||| || |||||| |||| ||| | Sbjct 8627 CAGCTGCGGCCGCCATCATGGGGGTCAATACCACGCCGGCCACTACCGCACTGTAGGAGC 8686 Query 17823 CCATCCCGAGTTGAGGTTCGACGAGGACAATGTCCACAAGCAATGCGCCCCGTGCAACAA 17882 | || ||| ||||||| || | || | | ||||| ||||||||||||||||| Sbjct 8687 GAACCCAGAGCTGAGGTTTGAGCCGCTGAACGCCTGGAAGCAGTGCGCCCCGTGCAACAA 8746 Query 17883 CCACAAGTCGGGAGACGTCGTGAACTACCGGATCAACCTTGTGGCGAAGATCGGCGCTGC 17942 |||| || ||| || || | || ||||| ||| || | || ||||||| | Sbjct 8747 CCACCTTTCAGGAAACCTCATCAATTACCGAATCTCGCTCCTACAGAGAATCGGCGAGGA 8806 Query 17943 GGCTGTAGCGCGCCTGGAGGGTCCGCACGATGCAAGGAAGTGGACTGTGGAAGAGATCAA 18002 || || | || || || || || || || | ||||| || ||||| ||| | || Sbjct 8807 AAAAGTGGCATGGCTTGAAGGCCCTCATGAGGCCAAGAAGTACACCGTGGATGAGTTGAA 8866 Query 18003 GGCAATCAAGGCCCTGTATCGAGCCAAGGCCAGGGACGCGAAGA--GGGCT-GCCGCATG 18059 ||| || | ||| || || || ||| | | || ||||| ||| | || ||||| Sbjct 8867 GGCGATGACCGCCGACTACCGGGCAAAGACAAAAGAACTGAAGAAGGGGATCGCAGCATG 8926 Query 18060 AAGA 18063 |||| Sbjct 8927 AAGA 8930 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 133843336895730