Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_030942.1 Length=55524 Score E Sequences producing significant alignments: (Bits) Value seq3133 98.7 4e-16 seq1117 87.8 6e-13 >seq3133 Length=4061 Score = 98.7 bits (108), Expect = 4e-16 Identities = 110/147 (75%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 42845 GTTCTTCCCTGAGAAGGGTGGATCGACCGCAGAAGCCAAAACGATCTGCGCCGGGTGTGA 42904 |||||| ||||| ||||| |||||||| ||||| ||| ||||||| ||| ||||| Sbjct 1505 GTTCTTTCCTGAAAAGGGAGGATCGACGAGGGAAGCAAAACGGATCTGCCTCGGTTGTGA 1446 Query 42905 TGTGCGCGAACAGTGCCTGGAATGGGCGCTCGAGAACCAAGAACGGTTCGGGATCTTCGG 42964 || || || ||||||| || | ||||||| |||| | ||||||||||| |||| || Sbjct 1445 AGTTCGTGACGAGTGCCTCGAGTACGCGCTCGCGAACGACGAACGGTTCGGAATCTGGGG 1386 Query 42965 GGGCAAGTCGGAGCGTGAACGCCGCCG 42991 || ||| ||||| || || || || Sbjct 1385 AGGGTTGTCCGAGCGCGAGCGTCGGCG 1359 >seq1117 Length=4157 Score = 87.8 bits (96), Expect = 6e-13 Identities = 52/53 (98%), Gaps = 1/53 (2%) Strand=Plus/Plus Query 31105 TGGAGCCGATGACGGGAATCGAACCCGCGTATTCAGCTTGGGAAGCTG-TGTT 31156 |||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 3158 TGGAGCCGATGACGGGAATCGAACCCGCGTATTCAGCTTGGGAAGCTGATGTT 3210 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 177525670905660