Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_031007.1 Length=223935 Score E Sequences producing significant alignments: (Bits) Value seq6140 113 6e-20 seq4259 95.1 2e-14 >seq6140 Length=1248 Score = 113 bits (124), Expect = 6e-20 Identities = 177/251 (71%), Gaps = 2/251 (1%) Strand=Plus/Minus Query 99203 GACCGTACGGGAACCGGTACCCTGTCTATTTTCGGGCACCAGATGCGTTTCAATCTGCAA 99262 |||||||| || || || || | || ||||||| |||||||||| ||| ||||| Sbjct 956 GACCGTACCGGGACAGGCACACGTTCCGTTTTCGGCTACCAGATGCGATTCGATCTGTCG 897 Query 99263 GAAGGCTTTCCGCTGGTAACGACTAAGCG-CTGTCACATGCGTTCGATTATTCACGAACT 99321 | || ||||| | ||||| ||| ||| || | || || || ||||| || Sbjct 896 GCGGGTTTTCCTGCCCTGACGACCAAGAAACTG-CATCTCAAATCCATCATCCACGAGCT 838 Query 99322 GCTGTGGTTCCTGAAAGGCGATACCAATGTCAAATATTTAAATGATAATGGTGTAACTAT 99381 ||||||||||||||||||||| || || || ||| | || || || || || || || Sbjct 837 GCTGTGGTTCCTGAAAGGCGAAACGAACATCGCCTATCTCAAGGAAAACGGCGTGACGAT 778 Query 99382 TTGGGACGAATGGAAGAACAAAGATGGCGACCTCGGACCGGTATACGGTAAACAGTGGCG 99441 ||||| |||||| || | | ||||| ||||| ||||| || || | |||||||| Sbjct 777 CTGGGATGAATGGGCCGACGAGAACGGCGATCTCGGGCCGGTCTATGGCTATCAGTGGCG 718 Query 99442 GTCTTGGCCTG 99452 || ||||||| Sbjct 717 CTCCTGGCCTG 707 >seq4259 Length=4273 Score = 95.1 bits (104), Expect = 2e-14 Identities = 91/117 (78%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 88447 GAGATAGCTCCCTTCGCCTATATGCGTGGCCGCAACTTCGAGAACGCGGTCGTTATCTTA 88506 ||| | ||||| ||||||| ||||||||||| | || | |||| || | ||||| Sbjct 4040 GAGGTCGCTCCGCTCGCCTACATGCGTGGCCGGACGCTCAACGACGCCTTCATCATCTTG 3981 Query 88507 GATGAAGCTCAGAACACCACTGCTCAGCAGATGAAGCTCTTCCTGACCCGTATCGGG 88563 || ||||| ||||||||||| || ||||||||||| | ||||||||||| ||||| Sbjct 3980 GACGAAGCGCAGAACACCACGGCCGAGCAGATGAAGATGTTCCTGACCCGCCTCGGG 3924 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716338574021000