Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_031010.1 Length=246390 Score E Sequences producing significant alignments: (Bits) Value seq6140 129 9e-25 seq7603 111 2e-19 seq298 84.2 3e-11 seq160 84.2 3e-11 >seq6140 Length=1248 Score = 129 bits (142), Expect = 9e-25 Identities = 145/194 (75%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 202549 GACCGTACCGGCACCGGCACGCGCTCCTTGTTCGGGGCCCAGATGCGGTTTGACCTGACC 202608 ||||||||||| || ||||| || ||| | ||||| ||||||||| || || ||| | Sbjct 956 GACCGTACCGGGACAGGCACACGTTCCGTTTTCGGCTACCAGATGCGATTCGATCTGTCG 897 Query 202609 GAAGGCTTCCCACTGGTGACCACGAAAAAGGTTCACCTCCGTTCTATCATTCACGAGCTG 202668 | || || || |||| || || || | || ||| || ||||| ||||||||| Sbjct 896 GCGGGTTTTCCTGCCCTGACGACCAAGAAACTGCATCTCAAATCCATCATCCACGAGCTG 837 Query 202669 CTGTGGTTCCTGAAAGGGGACACCAACATCAGTTACCTGAACGATAACGGGGTCACTATC 202728 ||||||||||||||||| || || |||||| || || || || ||||| || || ||| Sbjct 836 CTGTGGTTCCTGAAAGGCGAAACGAACATCGCCTATCTCAAGGAAAACGGCGTGACGATC 777 Query 202729 TGGGACGAATGGGC 202742 ||||| |||||||| Sbjct 776 TGGGATGAATGGGC 763 >seq7603 Length=749 Score = 111 bits (122), Expect = 2e-19 Identities = 141/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 202549 GACCGTACCGGCACCGGCACGCGCTCCTTGTTCGGGGCCCAGATGCGGTTTGACCTGACC 202608 || || ||||| |||||||| ||| | | ||||| ||||||||| || || || || Sbjct 111 GATCGAACCGGAACCGGCACCCGCAGCATCTTCGGTCACCAGATGCGTTTCGATCTTGCC 170 Query 202609 GAAGGCTTCCCACTGGTGACCACGAAAAAGGTTCACCTCCGTTCTATCATTCACGAGCTG 202668 || ||||| || || || ||||| || ||||| |||||| || || | |||| || Sbjct 171 GACGGCTTTCCGCTCGTCACCACCAAGAAGGTCCACCTCAAGTCGATAGTCAACGAACTC 230 Query 202669 CTGTGGTTCCTGAAAGGGGACACCAACATCAGTTACCTGAACGATAACGGGGTCACTATC 202728 |||||||||||| || ||| ||||| | | ||| |||| |||| ||| | ||| Sbjct 231 CTGTGGTTCCTGCGCGGCGACTCCAACGTGGCGTGGCTGCACGAGCACGGCGTCTCCATC 290 Query 202729 TGGGACGAATGGGC 202742 |||||||| ||||| Sbjct 291 TGGGACGAGTGGGC 304 >seq298 Length=58794 Score = 84.2 bits (92), Expect = 3e-11 Identities = 67/78 (86%), Gaps = 2/78 (3%) Strand=Plus/Minus Query 2622 TAGGGAAGTAGTTCAATTGGTAGAGCGTCGGTCTCCAAAACCGGTTGTTGGAGGTTCGA- 2680 |||||| |||| |||||||| |||||||||||||||||||||| ||||| ||||||| Sbjct 58655 TAGGGACGTAGCTCAATTGGCAGAGCGTCGGTCTCCAAAACCGAAGGTTGGGGGTTCGAT 58596 Query 2681 GTCCTCTCTTCCCTGCCA 2698 | |||| | ||||||||| Sbjct 58595 GCCCTC-CGTCCCTGCCA 58579 >seq160 Length=487619 Score = 84.2 bits (92), Expect = 3e-11 Identities = 55/61 (90%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 2711 GTAGCTCAGACGGTTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAAACCCGT 2770 |||| |||| ||||||| |||||||||||||||||||||||||||||||||| ||||| Sbjct 108181 GTAGTTCAGCTGGTTAGAATGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAGTCCCGT 108240 Query 2771 C 2771 | Sbjct 108241 C 108241 Score = 84.2 bits (92), Expect = 3e-11 Identities = 55/61 (90%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 2711 GTAGCTCAGACGGTTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAAACCCGT 2770 |||| |||| ||||||| |||||||||||||||||||||||||||||||||| ||||| Sbjct 110297 GTAGTTCAGCTGGTTAGAATGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAGTCCCGT 110356 Query 2771 C 2771 | Sbjct 110357 C 110357 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 788181994730000