Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_031019.1 Length=41809 Score E Sequences producing significant alignments: (Bits) Value seq24 132 1e-26 seq816 111 4e-20 seq1130 93.3 1e-14 seq2164 86.0 2e-12 >seq24 Length=857 Score = 132 bits (146), Expect = 1e-26 Identities = 172/237 (73%), Gaps = 23/237 (10%) Strand=Plus/Plus Query 6700 TTATCTGCATCATCGTCTGTCTTTCGTGGGCTGTTAATCATTATCGTGATAACGCCATCA 6759 ||||||||||||||||||| || || ||||||||||||||||| |||||||||||||| | Sbjct 505 TTATCTGCATCATCGTCTGCCTGTCATGGGCTGTTAATCATTACCGTGATAACGCCATTA 564 Query 6760 CCTACAAAGAGCAGCGCGATAAA---GCCACA----TCAATC--------------ATCG 6798 ||||||||| |||||||| ||| |||| | | || | || Sbjct 565 CCTACAAAGCCCAGCGCGACAAAAATGCCAGAGAACTGAAGCTGGCGAACGCGGCAATTA 624 Query 6799 CTGATATGCAGAAGCGTCAACGAGATGTAGCAGAACTCGATGCCAGATACACAAAGGAGC 6858 |||| ||||||| ||| || || ||||| || | ||| |||| | |||||| |||||| Sbjct 625 CTGACATGCAGATGCGCCAGCGTGATGTTGCTGCACTGGATGAAAAATACACGAAGGAGT 684 Query 6859 TTGCTGATGCTAACGC-GACTATCGAAACTCTCCGCGCTGATGTTTCTGCTGGGCGT 6914 | ||| |||| || || || || || |||| || | || |||| | ||||| ||| Sbjct 685 TAGCTAATGCGAAAGCTGAAAAT-GATGCTCTGCGTGATGGTGTTGCCGCTGGTCGT 740 >seq816 Length=14434 Score = 111 bits (122), Expect = 4e-20 Identities = 157/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 216 GGAGCATCGCGTGGCAGAACTCGACGATGGCTACACCCGGACTGCAAATACACTGCTGGA 275 ||||| ||||||||||| ||||||||||| || || || | ||||||| ||||||| Sbjct 4111 GGAGCGGCGCGTGGCAGATCTCGACGATGGTTATACGCGCATTGCAAATGAGTTGCTGGA 4052 Query 276 AGCTGTCATGCTTTCTGGGCTTACTCAACATCAGCTACTGATTGTTATGGCTGTGTGGCG 335 |||||| ||||| | || | || || || ||||| ||| | | ||||||| ||| Sbjct 4051 AGCTGTGATGCTGGCCGGATTAACACAGCACCAGCTTCTGGTCTTCCTGGCTGTCATGCG 3992 Query 336 CAAGACATACGGTTATAACaaaaaaaTAGATTGGATCGGAAATGAACAGTTCGCTGAACT 395 ||| ||||| || | ||| |||| | | |||||| | | || || || | | ||| | Sbjct 3991 CAAAACATATGGCTTTAATAAAAGACTGGATTGGGTGAGCAACGAGCAACTTTCCGAATT 3932 Query 396 CACTGGCATGGCGCCAACCAAATGTTCTACCGCCAAAAACG 436 || || || ||| | ||| |||||| | || |||| || Sbjct 3931 GACCGGGATATTGCCGAACAAGTGTTCTGCTGCAAAAAGCG 3891 Score = 111 bits (122), Expect = 4e-20 Identities = 63/64 (98%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 32752 CAATAAAAAACCGCCATCAGGCGGCTTGGTGTTCTTTCAGTTCTTCAATTCGAATATTGG 32811 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 11441 CAAGAAAAAACCGCCATCAGGCGGCTTGGTGTTCTTTCAGTTCTTCAATTCGAATATTGG 11382 Query 32812 TTAC 32815 |||| Sbjct 11381 TTAC 11378 >seq1130 Length=54118 Score = 93.3 bits (102), Expect = 1e-14 Identities = 88/110 (80%), Gaps = 7/110 (6%) Strand=Plus/Plus Query 10877 TTTGAAGAGTTCCGCCTATATCATCGCGATGAGAACGGCAAGATTGTCAAGACCAACGAT 10936 ||||||||||||||| | ||||| ||| | || |||||||||| ||||| ||||| Sbjct 37687 TTTGAAGAGTTCCGCATGTATCACCGCAAGGA---CGGCAAGATTATCAAGCTGGACGAT 37743 Query 10937 GA--TGTGCTCGATGCTACTCGCTACGGCTACATGATGCGCCGCTTCGCC 10984 || ||| ||| || || ||||||| |||||||||||||||||||||| Sbjct 37744 GACTTGTTGTCG--GCCACACGCTACGCCTACATGATGCGCCGCTTCGCC 37791 >seq2164 Length=1578 Score = 86.0 bits (94), Expect = 2e-12 Identities = 50/52 (96%), Gaps = 0/52 (0%) Strand=Plus/Plus Query 30653 ATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCAGTTAAA 30704 |||||||||||||||||||||||||||||||||||||||||||||| || || Sbjct 209 ATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTTCAA 260 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 133644969891510