Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_031029.1 Length=93686 Score E Sequences producing significant alignments: (Bits) Value seq1862 215 3e-51 seq3603 104 1e-17 seq582 102 5e-17 >seq1862 Length=5913 Score = 215 bits (238), Expect = 3e-51 Identities = 263/356 (74%), Gaps = 2/356 (1%) Strand=Plus/Plus Query 72599 GAGGACACAACAGTGGCAAACGACACCGTGATCACCGTGATCGGAAACCTGACCGCCGAT 72658 ||||| || ||| |||| ||||||| | |||||||| |||||||||||||| || ||| Sbjct 5176 GAGGA-ACCACA-TGGCTGGCGACACCATCATCACCGTCATCGGAAACCTGACGGCTGAT 5233 Query 72659 CCCGAACTGCGCTTCACCCCCTCGGGTGCGCCGGTCGCCAACTTCACCGTCGCAAGCACC 72718 || ||||| || |||||||| ||||||| |||| || |||||||| || || ||| Sbjct 5234 CCTGAACTTCGTTTCACCCCGGCGGGTGCCGCGGTTGCAAACTTCACGGTTGCTTCCACG 5293 Query 72719 CCGCGGTACTTCGACAAGCAGTCCAACGAGTGGAAGGACGCCGAGGCGCTCTTCCTGCGC 72778 || || ||||||| | ||||| || ||||| |||| ||| ||||| ||| |||| Sbjct 5294 CCCCGTACCTTCGACCGTAATTCCAATGAATGGAAAGACGGCGATGCGCTGTTCATGCGT 5353 Query 72779 TGCAACATCTGGCGCGAGCCGGCCGAGAACGTCACCGAGTCGCTGTCCAAGGGCATGCGC 72838 ||||||||||||||||| | |||||||||||| | ||| || || || || Sbjct 5354 TGCAACATCTGGCGCGAAGCAGCCGAGAACGTCGCGGAGAGCTTGACCCGTGGTTCACGA 5413 Query 72839 GTCATCGTCCAGGGTCGCCTCAAGCAGCGCAGCTACGAGACGAAGGAAGGCGAGAACCGG 72898 || ||||| || || ||||||||||| ||||| || || ||||| || || Sbjct 5414 GTAATCGTGAGCGGCCGGCTCAAGCAGCGTTCGTACGAAACTCGCGAGGGCGAAAAGCGA 5473 Query 72899 ACGGTCATCGAGCTCGAGGTCGAGGAGATCGGCCCCGCGCTGCGGTACGCCACCGC 72954 || ||| |||||||||| ||||| || ||||| || | ||| ||||||||| || Sbjct 5474 ACTGTCGTCGAGCTCGAAGTCGATGAAATCGGTCCTTCACTGAAGTACGCCACGGC 5529 >seq3603 Length=4408 Score = 104 bits (114), Expect = 1e-17 Identities = 164/233 (70%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 44112 AGGAGTTCGACGCGGACCCGGGCGTGGACGTCATCATCCTGGCCCGCGGCGGCGGCTCGA 44171 |||| ||||||| ||| || || |||||||||||||| || ||||||||||| Sbjct 211 AGGAACTCGACGCCAACCTGGTAGTCGACGTCATCATCCTCGCTCGCGGCGGCGGTAGCG 270 Query 44172 AGGAAGACCTCCTCCCGTGGTCCGACGAGGCTCTGGTTCGCGCCGCGTTCGCGTCTGCA- 44230 || || ||||| |||| |||||||| || ||| |||||| | || ||||| Sbjct 271 TCGAGGATCTCCTGCCGTTCTCCGACGAAGCGCTGTGCCGCGCCATCGTGGC--CTGCAC 328 Query 44231 -ACCCCGGTTGTGTCTGCGATTGGCCACGAGAATGATCGGCCGCTCCTCGACCGCGTTGT 44289 || ||| | || ||| || || |||||| || | |||||| |||| ||| | Sbjct 329 GACGCCGATCGTCAGTGCCATCGGACACGAGCCGGACAGCCCGCTCAGTGACCACGTCGC 388 Query 44290 GGACCTTCGAGCGGCAACTCCGACGGATGCAGCGAAACGTGTCGTACCCGACG 44342 ||||| || || || || || ||||| || || || || ||||||||||||| Sbjct 389 CGACCTGCGCGCAGCCACACCCACGGACGCGGCCAAGCGCGTCGTACCCGACG 441 >seq582 Length=79996 Score = 102 bits (112), Expect = 5e-17 Identities = 109/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 48170 CTGCCGTTCATCCATCCTCACGTCGCCCTCATGCCGGATGCACACGGCGGCAAAGGATCT 48229 ||||| || | |||| ||||| | |||||| || | || | ||||| || | Sbjct 74546 CTGCCCATCGTTTATCCGCACGTGGTGGCCATGCCCGACGTGCATGCCGGCATCGGCGCC 74605 Query 48230 GCCGTCGGCACGGTGATTCCCACGGTGGACGCCGTGATCCCGGCCGCGGTCGGCGTGGAC 48289 ||||||||| |||||||||||| | |||||| ||||||||||| || ||||| ||| Sbjct 74606 ACCGTCGGCAGCGTGATTCCCACGCGCGGCGCCGTCATCCCGGCCGCCGTGGGCGTCGAC 74665 Query 48290 ATCGGCTGCGGCATGATCGGCGTG 48313 |||||||||||||||| || |||| Sbjct 74666 ATCGGCTGCGGCATGAACGCCGTG 74689 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 299619250476835