Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq98 329 4e-85 seq531 174 2e-38 seq689 116 5e-21 seq404 95.1 2e-14 >seq98 Length=772300 Score = 329 bits (364), Expect = 4e-85 Identities = 810/1221 (66%), Gaps = 28/1221 (2%) Strand=Plus/Plus Query 77419 CGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAATACTATCAAACG 77478 || ||||||| ||||| ||||| | ||||| | | || ||| | ||| ||||| | Sbjct 408320 CGAAATAAATCGTTTCAAAAATTTCTTTATTTAAAATTTTTGCCCCTTCACTTTCAAATG 408379 Query 77479 GATAATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGGTCTAT 77538 | || | | || ||||| |||||||| |||||||| || || | ||||| ||||| | Sbjct 408380 GTAAACGCATCAGGATAAAAGCATCTGCCAATCCCTGTACACCTAAACCAACTGGTCTGT 408439 Query 77539 GTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAATGTCTATAATTTTAT 77598 | | | | |||||| |||||||||| | |||||||||||| || |||||||||| Sbjct 408440 GGCGCATGTTGGAATTTTTAGCTTCCTCTACCGGATAATAATTATGATCAATAATTTTAT 408499 Query 77599 TGAGATTTCTAACAAC----TACTTTAACCACGTCCTTTAGTTTAAGAAAATCAAATCTT 77654 | || || | | || ||| | || | || ||| || |||||| | Sbjct 408500 TCAGGTTCAGGGTAGCCTGATAGGTTA----CATCATATAATTTCTGATGATCAAACTCT 408555 Query 77655 CCATCTATAACAAACATGTTCAAAGCTATAGATGCTAGATTACAAACTGCTACCTCATTA 77714 || | || ||||| | |||||| | || || || ||||| || || ||||| | Sbjct 408556 CCGTTGATGACAAATCTTGGCAAAGCCAACGAGGCCAGGTTACATACAGCAACCTCGT-- 408613 Query 77715 GCGTTGGCA---TATTGTATTATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGA 77771 | |||| | || | ||| || || ||||| || || || |||||| || || | | Sbjct 408614 -CTTTGGAAGTATACTCTATAATTTCTGTACAAAGGTTGGAACTTTTGATGGTTCCTAAA 408672 Query 77772 TTTTGTTGGTTGCTCTTTTTATTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTT 77831 ||||| |||||| || | || || || ||||| | | | | || || |||||| Sbjct 408673 TTTTGCTGGTTGGATTTGCTGTTTGCTGCATCTTTATACAACAGATAAGGGGTTCCGGTT 408732 Query 77832 TCAATCTGTGATTCGATAATAGATTTCCAGACGACTCTAGCTTTTATCATAGATTT---G 77888 ||||||||||| || | ||| | ||| | || ||||| || | ||| | Sbjct 408733 TCAATCTGTGAATCCAGAATGGCAAACCAAAGCTCTTGTGCTTTAATGGT---TTTACGG 408789 Query 77889 TATCGCCTCTCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCA 77948 || | ||| |||| || | ||||| || ||||| | || | ||| Sbjct 408790 GCACGTCCTTCTTTTTCGTAACGCTCATATAAAGCATCGAATTCTGCACCAAAGCAATCT 408849 Query 77949 TCCAATCCAGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGT 78008 ||| ||| ||| ||||| || || | || |||||| || | ||| | || | | Sbjct 408850 GCCAGTCCCGGGGCTTCATGAGGACAGAATAAACTCCAGTCTCCGTTTTCTTCTACCCTT 408909 Query 78009 TTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCA 78068 |||| || || ||| || ||| || ||| |||| ||||| || | | ||||||| Sbjct 408910 CTCATGAACAGGTCACATACCCAAAGGGCATAGAATAAATCTCTGGCACGAAGTTCTTCT 408969 Query 78069 TTTCCTGTATTCTTTTTA---AGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCT 78125 || || || |||||| || || ||||| || | ||| | ||||||||| || Sbjct 408970 TTACC---ATGGTTTTTACGCAGGTCCAGAAAACTCAGCACATCTGCATGCCATGGCTCC 409026 Query 78126 AGATATATTGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTG 78185 || || || || | | | || |||||| || ||||| || | ||| | |||||| Sbjct 409027 AGGTAAATGGCAAAAGCACCTTTACGTTTACCTCCACCCTGGTCCACATAACGGGCGGTA 409086 Query 78186 TTATTATAAACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATA 78245 | ||| | ||| ||||||| || | ||| || || || || ||||||||| |||| Sbjct 409087 TCGTTAAATACTTTCAACATAGGTACAATCCCATTGCTGGTCCCGTTTGTTCCACCAATA 409146 Query 78246 TAACTTCCACTTGCGCGAATATTACTAATGGATATCCCTATTCCTCCTGCCATCTTAGAT 78305 ||| ||| | || || || ||| ||| || || || || ||||| | | || Sbjct 409147 TAAGATCCCGTGGCACGGATGTTATGGATGCTTAAACCAATACCACCTGCGCTTTGTGAA 409206 Query 78306 ATTAGAGCGCAACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCATGTTA 78365 ||| |||| |||| || |||||||| || || || |||||||| ||| |||| | Sbjct 409207 ATTTTAGCGGTTTGTTTTAAAGTATCGTAAATTCCTTCAATACTGTCGTCCTGCATGGTC 409266 Query 78366 AGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGAT 78425 || | ||| ||| |||||||||| | | | || ||||||||||||| || || | | Sbjct 409267 AGTAAAAAGCAGGAAGACATTTGAGGTTTAGGGGTAGCTGCATTAAATAAAGTTGGGGTT 409326 Query 78426 GCATGCGTAAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAGCTGATTCTATGTCC 78485 |||||||||||||| ||| | || || || ||| |||| || ||| || || Sbjct 409327 GCATGCGTAAACCAGCGCTCACTCATCAGGTTATACGTTGCAATCGCACTTTCAATATCT 409386 Query 78486 CATTGATGAATTCCTACCGCTACACGCATCAACATATGCTGAGGTCTTTCAACCGTCTTA 78545 || ||||| ||||| || |||||||| |||| ||| || || | ||| || | || Sbjct 409387 TCTTTGTGAATCCCTACGGCAACACGCATAAACAAATGTTGCGGGCGTTCTACAAT-TTG 409445 Query 78546 TTATT-TATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGA 78604 | || |||||||| || || |||||||| | |||||||| |||||||| | | || Sbjct 409446 TCCTTCTATTTTCAGCAGATAGGATTTTTCAAGGGTTTTAAACCCAAAATAATCGAATCC 409505 Query 78605 AAAGTCTCTCTCGTAAATAAT 78625 ||| || || || |||||||| Sbjct 409506 AAAATCCCTGTCATAAATAAT 409526 Score = 217 bits (240), Expect = 2e-51 Identities = 583/879 (66%), Gaps = 13/879 (1%) Strand=Plus/Plus Query 47848 TTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATAT 47907 |||||||||| ||||||||||||||||| || ||||| |||||||||| || || || Sbjct 410100 TTTTTTGATAATCACCCACACGTTTCTCAAAGAAATTGGTTTTGCCTTGCAGGGAGATCA 410159 Query 47908 TTTCCATAAAATCAAATGGATTAACTGCATTATAAAtttttttAAATCCTAATT-CTGAA 47966 | |||||||||||||| ||||| |||| ||| ||||| || | || | || ||| | Sbjct 410160 TCTCCATAAAATCAAACGGATTGGTGGCATGATATATTTTGGTATAACCCAGTTCCTGCA 410219 Query 47967 ATCAGTCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATTCCTATA 48026 || ||| |||||||| || || ||||| | ||||| || |||||| || || Sbjct 410220 GCCA-TCTGTCTGCAACAAACTCAATATACTGTGACATCAGTTTTGCATTCATCCCGATC 410278 Query 48027 AGTTTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCATCCACTATT 48086 || ||| || | || || |||| ||| || | |||||| || || || || Sbjct 410279 AGGGCAACCGGCAAGGCATCTGTAATAAATTCCTTTTCGATTTCTACCGCGTCGCGGATA 410338 Query 48087 A-TCGATGTTACCGTTTCCTCACTTGGTGGATACAACAAATGTTTAAACATTAAACATGC 48145 | || ||| || ||||| || || || | |||| | | | || || Sbjct 410339 ATTCCATG-AACGACTTCCTGGCTCAGTTTATTTTTGAGCATTTTATAAAGCAGGCAGGC 410397 Query 48146 AAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGG 48205 ||| |||||||| | || |||||||| ||| || || ||| ||| || || || || Sbjct 410398 AAATTCACAATGCATCCCCTCATCTCTGGAAATCAACTCATTACTAAAGGTTAGCCCTGG 410457 Query 48206 CATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAG-AAAAGAATATGC 48264 ||| || || | |||||| | ||| || || | | ||| ||| | ||||| |||| Sbjct 410458 CATCAGGCCTCTTTTTTTCAACCAGAAGATCG-AACAGAAGCTCCCGCTGAAGAAAATGC 410516 Query 48265 CTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTGTGTATCCACC 48324 |||| || || || || || | | || | || | | || | ||||| | Sbjct 410517 CTTCCACTGCGGCGAAAGCCACCAAACGTTCGGCAAAATT---TCCGCCCTCAATCCAGC 410573 Query 48325 GTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAA 48384 | |||||| || || || |||||||||||||| | || |||| |||| || || Sbjct 410574 GCAATGCCCATTCTGCTTTTTTCTTTACACAAGGAACCGTCTCTACGGCATGGAACAGCC 410633 Query 48385 AGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGT 48444 || |||||| | |||||||| || ||||| || | || ||| |||| |||| Sbjct 410634 TGTCTTTTTCTTCAGGATCTTTAATATAGGTATCGATCAGCAGCGCATAGGTTTCAGAGT 410693 Query 48445 GAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCT 48504 | || ||||| || ||||| || || |||||||| | ||||| | | ||||| || Sbjct 410694 GGATGTTTTCCATCATGATCTGGAAGCCATAAAAACAACGGGCTTCGGGAAGCTGTA-CT 410752 Query 48505 CCGTACAAAATCGTTCA--GCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAA 48562 || || | ||||| || | || |||||||| || || ||||| ||||||||||| Sbjct 410753 TCGCTCATGA-AGTTCACTGCAAGGTTTTCATTTACAATGCCGTCACTTGCAGCAAAAAA 410811 Query 48563 TGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCAGTCATTGAT 48622 || | || ||| ||| |||| ||| | | | | || | ||||| || Sbjct 410812 AGCAAGTATATGAGAAATGAAATGACGCTCGCCTGTATTTAAGTTGTCCCAGTGCTTCTG 410871 Query 48623 ATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACAT 48682 || | || | || | ||||||||| ||||| || ||| || || |||||||| Sbjct 410872 GTCATCAGAAAGGTCAATTTCTTCAGCGGTCCAGAAACTTGCTTCACTCTTCTTATACAT 410931 Query 48683 ATTCCATATATCACTGTATTGGATTGGGAAAATAACAAA 48721 | ||| || ||| ||||| || || |||| |||||| Sbjct 410932 TTCCCAGATTTCAGGGTATTTAATAGGCAAAAGAACAAA 410970 >seq531 Length=89189 Score = 174 bits (192), Expect = 2e-38 Identities = 215/294 (73%), Gaps = 0/294 (0%) Strand=Plus/Plus Query 48137 TAAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGT 48196 || ||| ||||| |||||||| | ||||||||| | ||| || | ||||| || | Sbjct 87865 TAGACAGGCAAAGTCACAATGTAAACCTTCATCGCGACTGATATACTCGTTCGAGTGGGC 87924 Query 48197 GAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAA 48256 ||||| ||||| | |||||||| |||||||| ||||| | |||| |||||| || Sbjct 87925 CAGACCAGGCATCAAGCCACGTTTCTTGAGCCAGAATATCGAACAGAAACTTCCAGAGAA 87984 Query 48257 GAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTGTG 48316 || || ||||| || || |||||||| ||||||||| | | || ||||| Sbjct 87985 AAAGATACCTTCGACTGCTGCAAATGCCACCAGTCTCTCTGCAAACGATGCAGAGTTGTT 88044 Query 48317 TATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATT 48376 |||||| || | ||||||||||||||||| || ||||| || ||||| ||||||||||| Sbjct 88045 TATCCAACGAAGAGCCCAATCAGCCTTCTTTTTGACACATGGAATTGTCTCTATAGCATT 88104 Query 48377 AAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACT 48430 || | | | |||||| ||||||||| || |||||||| || ||||| Sbjct 88105 GAATAACTTGGTCTTTTCAAATGTATCTTTAATATATGTATCTATCAATAGACT 88158 Score = 100 bits (110), Expect = 4e-16 Identities = 100/129 (78%), Gaps = 3/129 (2%) Strand=Plus/Plus Query 48602 CAGTTTATT---CCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAA 48658 |||||||| ||| |||| |||||||| ||||| ||| | || | ||| ||||| || Sbjct 88472 CAGTTTATATTCCCATTCATAGATATCTTGTGATAGATCGATATCATTAGCAGTCCAGAA 88531 Query 48659 TGATGCCTCTGCTTTTTTATACATATTCCATATATCACTGTATTGGATTGGGAAAATAAC 48718 |||||||||||| ||||||||| ||||| || || ||||| |||||| || | ||| Sbjct 88532 TGATGCCTCTGCAGATTTATACATCTTCCAAATGTCTGGGTATTTGATTGGAAACAGAAC 88591 Query 48719 AAATCTATT 48727 |||||| || Sbjct 88592 AAATCTGTT 88600 >seq689 Length=46727 Score = 116 bits (128), Expect = 5e-21 Identities = 205/296 (69%), Gaps = 6/296 (2%) Strand=Plus/Minus Query 48140 ACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 48199 ||| ||||| || || || | |||||| || | || || || ||||| ||||| || | Sbjct 18316 ACAGGCAAAGTCGCAGTGCAAACCTTCGTCACGGCTGATCAACTCGTTGGAAAAGGTCAA 18257 Query 48200 ACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAA 48259 ||| ||||| | |||||| || ||||||||||| |||| |||| ||||| || || Sbjct 18256 ACCTGGCATCAATCCACGCTTCTTGAGCCAAAAGATTGAACAGAAACTACCAGAGAAAAA 18197 Query 48260 TATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCG---TTGTG 48316 || || || ||||| ||||| || | | ||| | || | ||| | ||| | Sbjct 18196 GATACCCTCGACGGCTGCAAA--CGCCACCAAACGCTCGGCAAACGACTTGGAATTTGAG 18139 Query 48317 TATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATT 48376 ||||| | |||||| |||||||||||||| ||||| || || || ||||| ||||| Sbjct 18138 -ATCCATCTCAATGCCCAGTCAGCCTTCTTCTTGACACATGGAATAGTCTCTATGGCATT 18080 Query 48377 AAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTAT 48432 || | | | |||||| || |||| || ||||| ||||| | ||||| Sbjct 18079 GAACAAATTGGCCTTTTCAACTGGATTCTTAATATATGTATCGATTAATAAACTAT 18024 >seq404 Length=78127 Score = 95.1 bits (104), Expect = 2e-14 Identities = 432/678 (64%), Gaps = 23/678 (3%) Strand=Plus/Plus Query 77724 TATTGTATTATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTTGTTGGTTG 77783 ||||| | ||||| || || || || || | ||| ||||| ||||| |||||||| Sbjct 49010 TATTGGACAATCTCTGTGCAGAGGTTGGAGCACTGGATGGTGCCGAGATTCTGTTGGTTT 49069 Query 77784 CTCTTTTTATTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAATCTGTGAT 77843 ||| |||||| | |||||| || || ||| | || || || || |||||||| || Sbjct 49070 GACTTGGCATTGCAGGCGTCCTTGTAGAGGATATATGGGGTGCCAGTCTCAATCTGCGAC 49129 Query 77844 TCGATAATAGATTTCCAGACGACTCTAGCTTTTATCATAGATTTGTATCG---CCTC--- 77897 |||||||| || ||||| || || || || | || | || ||| Sbjct 49130 TCGATAATGGAGAACCAGAGATCTTGGGCCTTGATGGTC--TTGCGACCGAGACCTGGGG 49187 Query 77898 TCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCA 77957 | | | | || | || || || || || |||||||| |||| | | || Sbjct 49188 TGGCCT-CGTAGCGGGTGTAGAGAGCGCGGAACTCGTCTCCCCAGCAATCAGCGAGACCT 49246 Query 77958 GGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAG 78017 ||| || || || || | | || ||| || | | ||| || || | ||||||| Sbjct 49247 GGGGCCTCGTTGGGACAAAAGAGTGTCCACTCGGCGTTGGCCTCGACACGCTCCATAAAG 49306 Query 78018 AGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCTGTA 78077 ||||| | || ||| || || ||| || || |||| | ||||| ||||| Sbjct 49307 AGATCGGATACCCAGAGGGCGTAAAAGAGGTCACGGGCACGCATCTCTTCCTTTCCGTGG 49366 Query 78078 TTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATTGCC 78137 ||||| ||| || || |||||||| | ||| | |||||||| || || || || || Sbjct 49367 TTCTTGCGAAGGTCAAGGAACTCCATGACATCGGCGTGCCATGGCTCGAGGTAGATGGCA 49426 Query 78138 ATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACT 78197 | |||| || || |||||| || || | || | || |||| || | || Sbjct 49427 AAGGCTCCCTTGCGCTTGCCACCTCCTTGGTCGACGTAGCGAGCAGTGTCGTTGAACACG 49486 Query 78198 CTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTC--CAGAAATAT-AACTTCCA 78254 | | ||| |||| | |||||| ||||| || || || | | || |||| ||| || Sbjct 49487 CGAAGCATGGGAACGAGACCGTTGGATGTACCGTTGGTGCCGCGGATATATGAACGGGCA 49546 Query 78255 CTTGCGCGAATATTACTAATGGATATC----CCTATTCCTCCTGCCATCTTAGATATTAG 78310 ||||| || || |||| | | || || ||||| ||| ||| || || || Sbjct 49547 ---GCGCGGAT----CTTGTGGACAGCGAGACCAATGCCTCCGGCCGACTTGGAGATGAG 49599 Query 78311 AGCGCAACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCATGTTAAGAAG 78370 ||||| | || | |||||||||||||| || || ||||||| |||| | | ||| Sbjct 49600 GGCGCATTGCTTGAGGGTATCGTAGATACCATCGATCGAGTCATCCTTCATCTGGACAAG 49659 Query 78371 AAAACAGCTAGACATTTG 78388 || || |||||||| Sbjct 49660 GAAGCACGACGACATTTG 49677 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694547189543200