Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq98 297 3e-75 seq531 165 1e-35 seq689 116 5e-21 seq404 89.7 7e-13 >seq98 Length=772300 Score = 297 bits (328), Expect = 3e-75 Identities = 811/1230 (66%), Gaps = 38/1230 (3%) Strand=Plus/Plus Query 76010 GCACCGTAATAAATTGTTTCGAAAATCTTCTTATTAAGA--TCTTGCGC-TTCAAGACTA 76066 ||| || ||||||| ||||| ||||| | ||||| | | | |||| | |||| || Sbjct 408316 GCAGCGAAATAAATCGTTTCAAAAATTTCTTTATTTAAAATTTTTGCCCCTTCA---CTT 408372 Query 76067 TCAAAAGGATAATGTAAAAGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATA 76126 ||||| || || | | || ||||| |||||||| | |||||| || || | ||||| Sbjct 408373 TCAAATGGTAAACGCATCAGGATAAAAGCATCTGCCAATCCCTGTACACCTAAACCAACT 408432 Query 76127 GGTCTATGTCTCTTATTGGAAATTTCAGCTTCTGGAATAGGGTAATAATTAATATCTATA 76186 ||||| || | | | |||||| ||| |||||| | || ||||||||| ||| ||| Sbjct 408433 GGTCTGTGGCGCATGTTGGAATTTTTAGCTTCCTCTACCGGATAATAATTATGATCAATA 408492 Query 76187 ATTTTATTGAGATTTCTGACAAC----TACTTTAACCACGTCCTTTAGTTTGAGAAAATC 76242 |||||||| || || | | | || || || || | || ||| || ||| Sbjct 408493 ATTTTATTCAGGTTCAGGGTAGCCTGATAGGTT----ACATCATATAATTTCTGATGATC 408548 Query 76243 AAATTTTCCATCTATCACAAACATATTAAGAGCTATAGATGCTAGATTACAAACGGCTAC 76302 ||| | ||| | || ||||| | | ||| | || || || ||||| || || || Sbjct 408549 AAACTCTCCGTTGATGACAAATCTTGGCAAAGCCAACGAGGCCAGGTTACATACAGCAAC 408608 Query 76303 CTCATTAGCATTG---GCATATTGTATTATCTCCGTGCATAGATTACTACACTTGATAGT 76359 ||| | | ||| | ||| | ||| || || || || || || || ||||| || Sbjct 408609 CTCGT---CTTTGGAAGTATACTCTATAATTTCTGTACAAAGGTTGGAACTTTTGATGGT 408665 Query 76360 TCCAAGATTTTGTTGGTTGCTCTTTTTGTTACATGAGTCCTTATAAAGAACAAACGGAGT 76419 ||| | |||||| |||||| || |||| || || ||||| | | | | || || Sbjct 408666 TCCTAAATTTTGCTGGTTGGATTTGCTGTTTGCTGCATCTTTATACAACAGATAAGGGGT 408725 Query 76420 TCCAGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCTAGCTTTTATTATAGA 76479 ||| |||||||||||||| || | ||| | ||| | || ||||| || | Sbjct 408726 TCCGGTTTCAATCTGTGAATCCAGAATGGCAAACCAAAGCTCTTGTGCTTTAAT----GG 408781 Query 76480 TTTGTA---TCGCTTC--TCTCTTTCATATTGTGTATATAACCGTTCAAATTCATCTCCC 76534 ||| || | | || ||| |||| || | |||||| || ||||| | || Sbjct 408782 TTT-TACGGGCACGTCCTTCTTTTTCGTAACGCTCATATAAAGCATCGAATTCTGCACCA 408840 Query 76535 CAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCC 76594 | ||| ||| || || ||||| ||||| | || ||| || || | ||| Sbjct 408841 AAGCAATCTGCCAGTCCCGGGGCTTCATGAGGACAGAATAAACTCCAGTCTCCGTTTTCT 408900 Query 76595 TTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTA 76654 | |||| | |||| || || ||| || ||| || ||| |||| ||||| || | | Sbjct 408901 TCTACCCTTCTCATGAACAGGTCACATACCCAAAGGGCATAGAATAAATCTCTGGCACGA 408960 Query 76655 CGTTCTTCATTTCCTGTATTCTTTTTA---AGATCTAGGAACTCCATAATATCAGAATGC 76711 ||||||| || || || |||||| || || || || || | ||| | |||| Sbjct 408961 AGTTCTTCTTTACC---ATGGTTTTTACGCAGGTCCAGAAAACTCAGCACATCTGCATGC 409017 Query 76712 CATGGTTCTAGATATATCGCCATAACACCCGGTCGTTTATTACCTCCCTGATCTATATAT 76771 ||||| || || || || || | | |||| |||||| || ||||| || | ||| Sbjct 409018 CATGGCTCCAGGTAAATGGCAAAAGCACCTTTACGTTTACCTCCACCCTGGTCCACATAA 409077 Query 76772 CTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTT 76831 | ||| || | ||| | ||| ||||||| || | ||| || || || || |||||| Sbjct 409078 CGGGCGGTATCGTTAAATACTTTCAACATAGGTACAATCCCATTGCTGGTCCCGTTTGTT 409137 Query 76832 CCAGAAATATAACTTCCACATGCACGAATATTACTAATAGATAGGCCTATTCCTCCTGCC 76891 ||| ||||||| ||| ||||| || ||| || || || || || ||||| Sbjct 409138 CCACCAATATAAGATCCCGTGGCACGGATGTTATGGATGCTTAAACCAATACCACCTGCG 409197 Query 76892 ATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATGCCCTCTATACTATCATCC 76951 ||| || ||| ||| |||| || || || || || || || ||||| || ||| Sbjct 409198 CTTTGTGAAATTTTAGCGGTTTGTTTTAAAGTATCGTAAATTCCTTCAATACTGTCGTCC 409257 Query 76952 ATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAACAAT 77011 |||| | || | ||| ||| |||||||||| | | | || |||||||||| || Sbjct 409258 TGCATGGTCAGTAAAAAGCAGGAAGACATTTGAGGTTTAGGGGTAGCTGCATTAAATAAA 409317 Query 77012 GTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAACTGCT 77071 || || | |||||| || ||||| ||| | || || || ||| |||| | | Sbjct 409318 GTTGGGGTTGCATGCGTAAACCAGCGCTCACTCATCAGGTTATACGTTGCAATCGCACTT 409377 Query 77072 TCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAACATATGCTGAGGTCGTTCT 77131 || ||||| || ||||| ||||| || |||||||| |||| ||| || || |||||| Sbjct 409378 TCAATATCTTCTTTGTGAATCCCTACGGCAACACGCATAAACAAATGTTGCGGGCGTTCT 409437 Query 77132 ACAGTCTTATTATT-TATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATA 77190 ||| | || | || |||||||| || || |||||||| | |||||||| |||||||| Sbjct 409438 ACAAT-TTGTCCTTCTATTTTCAGCAGATAGGATTTTTCAAGGGTTTTAAACCCAAAATA 409496 Query 77191 GTTGTATGAAAAGTCTCTTTCGTAAATAAT 77220 | | || ||| || || || |||||||| Sbjct 409497 ATCGAATCCAAAATCCCTGTCATAAATAAT 409526 Score = 248 bits (274), Expect = 1e-60 Identities = 591/880 (67%), Gaps = 15/880 (2%) Strand=Plus/Plus Query 46337 TTTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATAT 46396 ||||||| || ||||| ||||||||||| || ||||| |||||||||| || || || Sbjct 410100 TTTTTTGATAATCACCCACACGTTTCTCAAAGAAATTGGTTTTGCCTTGCAGGGAGATCA 410159 Query 46397 TTTCCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAATCCTAATTC-TGAA 46455 | |||||||||||||||||||| || ||| ||| ||||| || | || | ||| || | Sbjct 410160 TCTCCATAAAATCAAACGGATTGGTGGCATGATATATTTTGGTATAACCCAGTTCCTGCA 410219 Query 46456 ATCAGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCATTCCTATG 46515 || ||| |||||||| || || |||||| | ||||| || |||||| || || Sbjct 410220 GCCA-TCTGTCTGCAACAAACTCAATATACTGTGACATCAGTTTTGCATTCATCCCGATC 410278 Query 46516 AGTTTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATCC--GATA 46573 || ||||| | || || |||| ||| || | ||| || || || || |||| Sbjct 410279 AGGGCAACCGGCAAGGCATCTGTAATAAATTCCTTTTCGATTTCTACCGCGTCGCGGATA 410338 Query 46574 TTATCGATGTTACTGTTTCCTCACTTGGTGGATGCATCAAATGTTTAAACATTAAACATG 46633 | || ||| || ||||| || || || | | |||| | | | || | Sbjct 410339 AT-TCCATGA-ACGACTTCCTGGCTCAGTTTATTTTTGAGCATTTTATAAAGCAGGCAGG 410396 Query 46634 CAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAG 46693 |||| |||||||| | || |||||||| ||| || || ||| ||| || ||||| | Sbjct 410397 CAAATTCACAATGCATCCCCTCATCTCTGGAAATCAACTCATTACTAAAGGTTAGCCCTG 410456 Query 46694 GCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAA-AAGAATATG 46752 |||| || || | ||||| | ||| || || | ||| | ||| | ||||| ||| Sbjct 410457 GCATCAGGCCTCTTTTTTTCAACCAGAAGATCGAACAGAA-GCTCCCGCTGAAGAAAATG 410515 Query 46753 CCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATTATGAATCCAC 46812 ||||| || || ||||| || || | | || | || | | | | | ||||| Sbjct 410516 CCTTCCACTGCGGCGAAAGCCACCAAACGTTCGGCAAAATTTCCGCCCTCA---ATCCAG 410572 Query 46813 CTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGA 46872 | ||||| || || ||||||||||||||||| | || |||| |||| || || Sbjct 410573 CGCAATGCCCATTCTGCTTTTTTCTTTACACAAGGAACCGTCTCTACGGCATGGAACAGC 410632 Query 46873 AAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAA 46932 || |||||| ||| |||||||| ||| ||||| || | || ||| |||| || Sbjct 410633 CTGTCTTTTTCTTCAGGATCTTTAATATAGGTATCGATCAGCAGCGCATAGGTTTCAGAG 410692 Query 46933 TGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACC 46992 || |||||||| || ||||| || || |||||||| | ||||| | || |||||| Sbjct 410693 TGGATGTTTTCCATCATGATCTGGAAGCCATAAAAACAACGGGCTTCGGGAAGCTGTACT 410752 Query 46993 TCTGTACAAAATCGTTCA--GACAAATTCTCATTCACTATTCCATCACTAGCAGCAAAAA 47050 || | || | ||||| | | || ||||| || || || ||||| |||||||||| Sbjct 410753 TC-GCTCATGA-AGTTCACTGCAAGGTTTTCATTTACAATGCCGTCACTTGCAGCAAAAA 410810 Query 47051 ATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTATTCCAGTCATTGA 47110 | || | || ||| ||| |||| || | ||| | | || | ||||| || Sbjct 410811 AAGCAAGTATATGAGAAATGAAATGACGCTCGCCTGTATTTAAGTTGTCCCAGTGCTTCT 410870 Query 47111 TATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACA 47170 || | || | || | ||||||||| |||||||| || || || ||||||| Sbjct 410871 GGTCATCAGAAAGGTCAATTTCTTCAGCGGTCCAGAAACTTGCTTCACTCTTCTTATACA 410930 Query 47171 TATTCCATATATCACGATATTGGATCGGAAAAATAACAAA 47210 | | ||| || ||| | |||| || || |||| |||||| Sbjct 410931 TTTCCCAGATTTCAGGGTATTTAATAGGCAAAAGAACAAA 410970 >seq531 Length=89189 Score = 165 bits (182), Expect = 1e-35 Identities = 213/294 (72%), Gaps = 0/294 (0%) Strand=Plus/Plus Query 46626 TAAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGT 46685 || ||| ||||| |||||||| | |||||||| | ||| || | ||||| || | Sbjct 87865 TAGACAGGCAAAGTCACAATGTAAACCTTCATCGCGACTGATATACTCGTTCGAGTGGGC 87924 Query 46686 GAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAA 46745 || |||||||| | ||||| || |||||||| ||||| | |||| |||||| || Sbjct 87925 CAGACCAGGCATCAAGCCACGTTTCTTGAGCCAGAATATCGAACAGAAACTTCCAGAGAA 87984 Query 46746 GAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATTATG 46805 || || ||||| || || || ||||| || ||||||||| | | ||| || | Sbjct 87985 AAAGATACCTTCGACTGCTGCAAATGCCACCAGTCTCTCTGCAAACGATGCAGAGTTGTT 88044 Query 46806 AATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATT 46865 ||||| | |||||||||||||||| || || ||||| || ||||| ||||||||||| Sbjct 88045 TATCCAACGAAGAGCCCAATCAGCCTTCTTTTTGACACATGGAATTGTCTCTATAGCATT 88104 Query 46866 AAAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACT 46919 || | | | |||||| ||||||||| |||||||||||| || ||||| Sbjct 88105 GAATAACTTGGTCTTTTCAAATGTATCTTTAATATATGTATCTATCAATAGACT 88158 Score = 100 bits (110), Expect = 4e-16 Identities = 100/129 (78%), Gaps = 3/129 (2%) Strand=Plus/Plus Query 47091 CAGTTTATT---CCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAA 47147 |||||||| ||| |||| |||||||| ||||| ||| | || | ||| |||||||| Sbjct 88472 CAGTTTATATTCCCATTCATAGATATCTTGTGATAGATCGATATCATTAGCAGTCCAGAA 88531 Query 47148 TGACGCCTCTGCTTTTTTATACATATTCCATATATCACGATATTGGATCGGAAAAATAAC 47207 ||| |||||||| ||||||||| ||||| || || | |||| ||| ||||| | ||| Sbjct 88532 TGATGCCTCTGCAGATTTATACATCTTCCAAATGTCTGGGTATTTGATTGGAAACAGAAC 88591 Query 47208 AAATCTATT 47216 |||||| || Sbjct 88592 AAATCTGTT 88600 >seq689 Length=46727 Score = 116 bits (128), Expect = 5e-21 Identities = 206/296 (70%), Gaps = 6/296 (2%) Strand=Plus/Minus Query 46629 ACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 46688 ||| ||||| || || || | ||||| || | || || || ||||| ||||| || | Sbjct 18316 ACAGGCAAAGTCGCAGTGCAAACCTTCGTCACGGCTGATCAACTCGTTGGAAAAGGTCAA 18257 Query 46689 CCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAA 46748 || ||||| | ||||||||| ||||||||||| || | |||| ||||| || || Sbjct 18256 ACCTGGCATCAATCCACGCTTCTTGAGCCAAAAGATTGAACAGAAACTACCAGAGAAAAA 18197 Query 46749 TATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTA--ACTGGCATCATTATGA 46806 || || || || || || || || || | | ||| | | ||| | | ||| ||| Sbjct 18196 GATACCCTCGACGGCTGCAAACGCCACCAAACGCTCGGCAAACGACTTGGA--ATT-TGA 18140 Query 46807 -ATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATT 46865 ||||| || ||||| |||||||| ||||| ||||| || || || ||||| ||||| Sbjct 18139 GATCCATCTCAATGCCCAGTCAGCCTTCTTCTTGACACATGGAATAGTCTCTATGGCATT 18080 Query 46866 AAAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTAT 46921 || | | | |||||| | || |||| ||||||||| ||||| | ||||| Sbjct 18079 GAACAAATTGGCCTTTTCAACTGGATTCTTAATATATGTATCGATTAATAAACTAT 18024 >seq404 Length=78127 Score = 89.7 bits (98), Expect = 7e-13 Identities = 458/722 (63%), Gaps = 15/722 (2%) Strand=Plus/Plus Query 76271 AGAGCTATAGATGCTAGATTACAAACGGCTACCTCATTAGCATTGGCATATTGTATTATC 76330 || || || || || || || || ||||| || || | | | || ||||| | ||| Sbjct 48962 AGGGCAATCGAGGCGAGGTTGCACACGGCCACTTCGTCGGGAGAGGTGTATTGGACAATC 49021 Query 76331 TCCGTGCATAGATTACTACACTTGATAGTTCCAAGATTTTGTTGGTTGCTCTTTTTGTTA 76390 || ||||| || || |||| ||| || || ||||| |||||||| ||| || Sbjct 49022 TCTGTGCAGAGGTTGGAGCACTGGATGGTGCCGAGATTCTGTTGGTTTGACTTGGCATTG 49081 Query 76391 CATGAGTCCTTATAAAGAACAAACGGAGTTCCAGTTTCAATCTGTGATTCGATAATAGAT 76450 || | |||||| || || | | | || || ||||| |||||||| || |||||||| || Sbjct 49082 CAGGCGTCCTTGTAGAGGATATATGGGGTGCCAGTCTCAATCTGCGACTCGATAATGGAG 49141 Query 76451 TTCCAGACGACTCTAGCTTTTATTATAGATTTGTATCGCTTC-TCTCTT----TCATATT 76505 ||||| || || || || | || | || | | | || || Sbjct 49142 AACCAGAGATCTTGGGCCTTGATGGTC--TTGCGACCGAGACCTGGGGTGGCCTCGTAGC 49199 Query 76506 GTGTATATA-ACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTC 76564 | || || | | || || | | |||||||| |||| | | ||| || || || Sbjct 49200 GGGTGTAGAGAGCGCGGAACT-CGTCTCCCCAGCAATCAGCGAGACCTGGGGCCTCGTTG 49258 Query 76565 GGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATC 76624 ||||| | | || |||||| | | ||| || || | |||||||||||| | || | Sbjct 49259 GGACAAAAGAGTGTCCACTCGGCGTTGGCCTCGACACGCTCCATAAAGAGATCGGATACC 49318 Query 76625 CATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGA 76684 || || || ||| || || |||| | ||||| ||||| ||||| ||| Sbjct 49319 CAGAGGGCGTAAAAGAGGTCACGGGCACGCATCTCTTCCTTTCCGTGGTTCTTGCGAAGG 49378 Query 76685 TCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATAACACCCGGT 76744 || ||||||||||| | ||| | |||||||| || || || || || | | ||| Sbjct 49379 TCAAGGAACTCCATGACATCGGCGTGCCATGGCTCGAGGTAGATGGCAAAGGCTCCCTTG 49438 Query 76745 CGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGA 76804 || || |||||| || || | || | ||||||| || | || | | ||| ||| Sbjct 49439 CGCTTGCCACCTCCTTGGTCGACGTAGCGAGCAGTGTCGTTGAACACGCGAAGCATGGGA 49498 Query 76805 ATAATGCCGTTAGATGTACCATTTGTTC--CAGAAATAT-AACTTCCACATGCACGAATA 76861 | | ||||| |||||||| || || | | || |||| ||| || || || || Sbjct 49499 ACGAGACCGTTGGATGTACCGTTGGTGCCGCGGATATATGAACGGGCA---GCGCGGATC 49555 Query 76862 TTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAAT 76921 || | || || || || ||||| ||| || ||||| || || || | || | Sbjct 49556 TTGTGGACAGCGAGACCAATGCCTCCGGCCGACTTGGAGATGAGGGCGCATTGCTTGAGG 49615 Query 76922 GTGTCATAGATGCCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTAGACATT 76981 || || ||||| || || || |||||| |||| | | ||| || || |||||| Sbjct 49616 GTATCGTAGATACCATCGATCGAGTCATCCTTCATCTGGACAAGGAAGCACGACGACATT 49675 Query 76982 TG 76983 || Sbjct 49676 TG 49677 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712809591921600