Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_031043.1 Length=229501 Score E Sequences producing significant alignments: (Bits) Value seq6140 100 4e-16 seq7603 84.2 3e-11 >seq6140 Length=1248 Score = 100 bits (110), Expect = 4e-16 Identities = 175/252 (69%), Gaps = 2/252 (1%) Strand=Plus/Minus Query 99522 GGCGACCGTACTGGCACTGGTACGTTGTCTCTGTTTGGGCATCAAATGCGTTTTAATTTG 99581 ||||||||||| || || || || || | || || | || ||||| || || || Sbjct 959 GGCGACCGTACCGGGACAGGCACACGTTCCGTTTTCGGCTACCAGATGCGATTCGATCTG 900 Query 99582 GCTGAAGGTTTTCCTCTGGTCACTACTAAGCG-CTGTCACCTCCGTTCTATTATTCATGA 99640 | | ||||||||| | || || ||| ||| || ||| || || || || || Sbjct 899 TCGGCGGGTTTTCCTGCCCTGACGACCAAGAAACTG-CATCTCAAATCCATCATCCACGA 841 Query 99641 ACTCCTTTGGTTCCTGAAAGGGGATACCAATACCCAGTACCTGAAAGATAACGGCGTCAC 99700 || || |||||||||||||| || || || | | || || || || |||||||| || Sbjct 840 GCTGCTGTGGTTCCTGAAAGGCGAAACGAACATCGCCTATCTCAAGGAAAACGGCGTGAC 781 Query 99701 TATCTGGAATGAGTGGGAAAACGAGAACGGTGACTTAGGACCGGTATACGGAAAGCAGTG 99760 |||||| |||| |||| |||||||||| || | || ||||| || || | ||||| Sbjct 780 GATCTGGGATGAATGGGCCGACGAGAACGGCGATCTCGGGCCGGTCTATGGCTATCAGTG 721 Query 99761 GCGGTCTTGGCC 99772 ||| || ||||| Sbjct 720 GCGCTCCTGGCC 709 >seq7603 Length=749 Score = 84.2 bits (92), Expect = 3e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 100167 CTGTCCTGTCAACTCTACCAACGTAGCGCGGACGTGTTCTTAGGTGTGCCGTTCAATATC 100226 || ||||| || || ||||| || ||||| ||| ||||| | || || |||||||| ||| Sbjct 528 CTCTCCTGCCAGCTGTACCAGCGCAGCGCCGACATGTTCCTCGGCGTTCCGTTCAACATC 587 Query 100227 GCGTCGTACGCTCTGCTGGTTCACATGTTTGCACAACAAGCCAACATGGCCGTGGGCGAC 100286 || ||||| ||||| |||||| | || || || ||| | | ||| ||||| Sbjct 588 GCCAGCTACGCGCTGCTCACCCACATGATGGCCCAGCAGGCCGGACTCGACGTCGGCGAG 647 Query 100287 TTCGTCTGGACGGGTGGTGAC 100307 ||||||||||| || || ||| Sbjct 648 TTCGTCTGGACCGGCGGCGAC 668 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 734146655947800