Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_031048.1 Length=41918 Score E Sequences producing significant alignments: (Bits) Value seq45 125 2e-24 seq685 113 1e-20 seq1321 111 4e-20 seq1320 98.7 3e-16 seq737 89.7 1e-13 seq833 87.8 5e-13 >seq45 Length=185997 Score = 125 bits (138), Expect = 2e-24 Identities = 207/295 (70%), Gaps = 13/295 (4%) Strand=Plus/Minus Query 26908 GCCATTCATGCCCACGTTGATTTCAGTGGTGTAGCGCTCAACGCCTTGCTGATCAGTCCA 26967 ||| | |||| | || ||||||||||||||| |||| | ||| | | || ||| Sbjct 40350 GCCTTGCATGTCGACCACGATTTCAGTGGTGTAACGCTTGATGCCGTCTTTTTC---CCA 40294 Query 26968 TTTACGGGTTCGCAGACCGCCTTCAATGAACACCTTGCTGCCTTTGCGCAGGTATTCACC 27027 | |||||| |||| |||||| ||| | |||| |||||||||||||||||||| Sbjct 40293 CTCGCGGGTTTGCAGCTTGCCTTCGATGTAGACCTGCGAACCTTTGCGCAGGTATTCACC 40234 Query 27028 AGCGATTTCCGCCAGCTTGCCGAAGAT-GACAACGCGGTGCCATTCCGTCTGCT----CT 27082 ||||| || || | ||||||||| || |||| | ||||||||||| || | || || Sbjct 40233 GGCGATCTCTGCAACCTTGCCGAACATCGACA-CACGGTGCCATTCGGTTTTCTCGACCT 40175 Query 27083 TTTGGTTCGCCTGTGGCCTTATCTTTCCACTTTTCGGTTGTGGCAATGCTGAGATTGGCA 27142 | || ||| || ||| || |||||| |||| | || || | || || |||| Sbjct 40174 TCTG----GCCGGTTTGCTTGTCGGTCCACTGTTCGCTGGTCGCCAGACTCAGGTTGGTC 40119 Query 27143 ACTGCGCCACCTGACGGCATGTAGCGCACTTCTGGATCGTTGCCTAAATTACCGA 27197 || ||| ||| ||||| |||||| ||||| ||||| | ||| | |||||| Sbjct 40118 ACGGCGTTACCGTTCGGCAAGTAGCGAACTTCGGGATCCTGGCCGCATGTACCGA 40064 >seq685 Length=77197 Score = 113 bits (124), Expect = 1e-20 Identities = 193/279 (69%), Gaps = 6/279 (2%) Strand=Plus/Minus Query 26906 CGGCCATTCAT---GCCCACGTTGATTTCAGTGGTGTAGCGCTCAACGCCTTGCTGATCA 26962 |||||||||| | | ||| ||| || ||||||||||| | || || | | || Sbjct 10870 CGGCCATTCACCTGGTCGACGACGATCTCGGTGGTGTAGCGTTTCACTCCGTCTTTTTC- 10812 Query 26963 GTCCATTTACGGGTTCGCAGACCGCCTTCAATGAACACCTTGCTGCCTTTGCGCAGGTAT 27022 ||| | ||||| || ||| |||||| | | | || ||| ||||| ||||| || Sbjct 10811 --CCACTCGCGGGTGCGGAGAGTGCCTTCGACGTAGCACTGGCTCCCTTTTCGCAGATAC 10754 Query 27023 TCACCAGCGATTTCCGCCAGCTTGCCGAAGATGACAACGCGGTGCCATTCCGTCTGCTCT 27082 ||||| |||||||| || | ||||||||||| || ||||||||||| || || |||| Sbjct 10753 TCACCCGCGATTTCGGCGATCTTGCCGAAGAACACTACGCGGTGCCACTCGGTACGCTCC 10694 Query 27083 TTTGGTTCGCCTGTGGCCTTATCTTTCCACTTTTCGGTTGTGGCAATGCTGAGATTGGCA 27142 | | | ||| || |||||||||||| ||||| | ||||| | | | | || | Sbjct 10693 TGCTGCTGGCCGGTCTGCTTATCTTTCCAGCTTTCGCTGGTGGCCAGGGTTATGTTCGTT 10634 Query 27143 ACTGCGCCACCTGACGGCATGTAGCGCACTTCTGGATCG 27181 || ||| || ||| ||||||| ||||| || ||| Sbjct 10633 ACGGCGTTGCCGTTCGGGGTGTAGCGGACTTCCGGGTCG 10595 >seq1321 Length=3862 Score = 111 bits (122), Expect = 4e-20 Identities = 157/218 (72%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 26970 TACGGGTTCGCAGACCGCCTTCAATGAACACCTTGCTGCCTTTGCGCAGGTATTCACCAG 27029 ||||||| || || || || ||| | |||| ||| |||||||| |||||||||| Sbjct 2850 TACGGGTACGGAGTTGCCCCTCGATGTAGACCTGCGCGCCCTTGCGCAGATATTCACCAG 2791 Query 27030 CGATTTCCGCCAGCTTGCCGAAGATGACAACGCGGTGCCATTCCGTCTGCTCTTTTGGTT 27089 | | |||||| ||||||||||| | || ||||||||||||||||||||||| | Sbjct 2790 CCACTTCCGCGAGCTTGCCGAACAGCACCACGCGGTGCCATTCCGTCTGCTCCCGCATCT 2731 Query 27090 CGCCTGTGGCCTTATCTTTCCACTTTTCGGTTGTGGCAATGCTG-AGATTGGCAACTGCG 27148 | || || || || ||| |||| | |||||| | ||| || || || |||||| Sbjct 2730 CCCCCGTCTGTTTGTCACGCCAGCTTTCTGATGTGGCCA-CCTGCAGGTTTGCCACTGCG 2672 Query 27149 CCACCTGACGGCATGTAGCGCACTTCTGGATCGTTGCC 27186 || || || ||||| || ||||| ||||| ||||| Sbjct 2671 CCCCCGTTGGGGATGTAACGGACTTCCGGATCATTGCC 2634 >seq1320 Length=7270 Score = 98.7 bits (108), Expect = 3e-16 Identities = 154/218 (71%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 26970 TACGGGTTCGCAGACCGCCTTCAATGAACACCTTGCTGCCTTTGCGCAGGTATTCACCAG 27029 ||||||| || || ||||| ||| | |||| ||| |||||||| ||||| |||| Sbjct 6234 TACGGGTGCGAAGCTGACCTTCGATGTAGACCTGCGCGCCCTTGCGCAGATATTCGCCAG 6175 Query 27030 CGATTTCCGCCAGCTTGCCGAAGATGACAACGCGGTGCCATTCCGTCTGCTCTTTTGGTT 27089 | | |||||| ||||||||||| | || ||||| |||||||| |||||||| | Sbjct 6174 CCACTTCCGCGAGCTTGCCGAACAGCACCACGCGATGCCATTCTGTCTGCTCCCGCATCT 6115 Query 27090 CGCCTGTGGCCTTATCTTTCCACTTTTCGGTTGTGGCAATGCTG-AGATTGGCAACTGCG 27148 | ||||| || || ||| |||| | ||||| | ||| || || || |||||| Sbjct 6114 CCCCTGTCTGTTTGTCACGCCAGGTTTCCGACGTGGCGA-CCTGCAGGTTTGCCACTGCG 6056 Query 27149 CCACCTGACGGCATGTAGCGCACTTCTGGATCGTTGCC 27186 || || || ||||| || ||||| ||||| || || Sbjct 6055 CCCCCGTTGGGGATGTAACGGACTTCCGGATCTTTTCC 6018 >seq737 Length=22238 Score = 89.7 bits (98), Expect = 1e-13 Identities = 187/279 (67%), Gaps = 0/279 (0%) Strand=Plus/Minus Query 26919 CCACGTTGATTTCAGTGGTGTAGCGCTCAACGCCTTGCTGATCAGTCCATTTACGGGTTC 26978 || || |||| || || | ||| ||| ||||| | || || || ||||||||||| Sbjct 8340 CCGCGATGATGTCGGTTGCGTACTTCTCGACGCCGTCCTTGTCCGTGTATTTACGGGTTT 8281 Query 26979 GCAGACCGCCTTCAATGAACACCTTGCTGCCTTTGCGCAGGTATTCACCAGCGATTTCCG 27038 |||||| |||||| | | | || ||||| |||||| | || ||||||||| Sbjct 8280 GCAGACGGCCTTCGACGTAGACGGACGAACCTTTTTTCAGGTACTGGCCGACGATTTCCG 8221 Query 27039 CCAGCTTGCCGAAGATGACAACGCGGTGCCATTCCGTCTGCTCTTTTGGTTCGCCTGTGG 27098 |||| |||||||| || |||||||| || ||| |||||| ||||||| ||| Sbjct 8220 CCAGGCGGCCGAAGAACGAAATACGGTGCCACTCTGTCAATTCTTTTTGTTCGCCCGTGT 8161 Query 27099 CCTTATCTTTCCACTTTTCGGTTGTGGCAATGCTGAGATTGGCAACTGCGCCACCTGACG 27158 || ||| |||| | | ||||| | | || ||||| | ||| | || | Sbjct 8160 TGCGGTCCTTCGACTTGTACGAAGTGGCCACGGCGATGTTGGCGATCGCGTCGCCGCTAG 8101 Query 27159 GCATGTAGCGCACTTCTGGATCGTTGCCTAAATTACCGA 27197 |||||||||| | ||| || || ||| | ||| |||| Sbjct 8100 GCATGTAGCGGATTTCCGGGTCACGGCCCAGATTGCCGA 8062 >seq833 Length=8904 Score = 87.8 bits (96), Expect = 5e-13 Identities = 190/282 (67%), Gaps = 7/282 (2%) Strand=Plus/Minus Query 26901 GCATACGGCCATTCATGCCCACGTTGATTTCAGTGGTGTAGCGCTCAACGCCTTGCTGAT 26960 |||| | ||| | |||| | ||| | ||||| |||||||| || | | || | | | Sbjct 8563 GCATTCTGCCCTGCATGTCGACGATAATTTCGGTGGTGTACCGTTTGATACCGTCTTTTT 8504 Query 26961 CAGTCCATTTACGGGTTCGCAGACCGCCTTCAATGAACACCTTGCTGCCTTTGCGCAGGT 27020 | ||| | || ||| | || ||||| ||| | |||| ||||| ||||| | Sbjct 8503 C---CCACTCTCGTGTTTGAAGCTTACCTTCGATGTATACCTGCGATCCTTTCCGCAGAT 8447 Query 27021 ATTCACCAGCGATTTCCGCCAGCTTGCCGAAGATGACAACGCGGTGCCATTCCGTCTGCT 27080 | |||||||||||||| || | || || || | ||| ||||||||||| |||| | Sbjct 8446 ACTCACCAGCGATTTCAGCGACTTTCCCAAACAAAGAAACACGGTGCCATTCGGTCTTTT 8387 Query 27081 C--TTTTGGTTCGCCTGTGGCCTTATCTTTCCACTTTTCGGTTGTGGCAATGCTGAGATT 27138 | ||| || | | || ||| || |||||| || |||| |||| ||||||||| Sbjct 8386 CGACTTTCTGTCCCGTTTG--CTTGTCAGTCCACTGCTCACTTGTTGCAAGGCTGAGATT 8329 Query 27139 GGCAACTGCGCCACCTGACGGCATGTAGCGCACTTCTGGATC 27180 || ||||| ||| ||| | |||||| ||||||||| Sbjct 8328 GGTTACTGCATTACCGTTCGGTAAGTAGCGAGTTTCTGGATC 8287 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 133993711882800