Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_031058.1 Length=58566 Score E Sequences producing significant alignments: (Bits) Value seq215 430 5e-116 seq1152 129 2e-25 >seq215 Length=48791 Score = 430 bits (476), Expect = 5e-116 Identities = 875/1286 (68%), Gaps = 45/1286 (3%) Strand=Plus/Plus Query 2311 GCAAGATCATTCTAGAACGCCAGATGGCGCGCTGGTATCAGCTGAAGGACCACGAGGTTC 2370 |||| | || || || ||||| || | |||||||| | |||||||| ||| ||| | Sbjct 13384 GCAACCTGATGCTTGATCGCCAACTGTCCCGCTGGTACCCACTGAAGGATCACCCGGTGC 13443 Query 2371 AGCTTCGACTGTTGCGTGCCGTTGAAGACGGTGTGCGCTTCCCCATTGTGCCCGCAGGAC 2430 | || ||| || || || || || | ||||| || | ||||||||||| | Sbjct 13444 AACTCGCCCTGGTGGCAGCGGTGTCGGAAGGAATTCGCTTTCCACTGGTGCCCGCAGGCC 13503 Query 2431 GACGCTCAGGCAAGACGGAACGCGCCAAGCGTTTTCTG-TCACGTCAGGCGATGTGGTAT 2489 | || || ||||| || || |||||| || || | | | ||||| | ||| Sbjct 13504 GTCGTAGCGGAAAGACTGAGCGGTTCAAGCGCTTCGTGGTGAAG-CAGGCATCGGCGTAC 13562 Query 2490 CCGGGCGAGAAGTATTTCGCAGCCGCGCCCACGTACAACCAGGCCAAGAAGATCTGGTGG 2549 ||| | ||| ||||| || || || ||| || |||||| ||||| |||| ||| Sbjct 13563 AGCGGC---ATGTACTTCGCCGCGGCACCAACGCACGCCCAGGCGAAGAAAATCTTCTGG 13619 Query 2550 GACGACCTCAAGGCGCTGACGCTGTCGTGTATGCACCCCAAGAAGCC--CAG--CGAGTC 2605 || ||||||||||| | ||||| | || |||||| || ||| | | |||||| Sbjct 13620 GATGACCTCAAGGCTTTCACGCTCTGCTGCATGCAC----AGTCGCCGGCCGTCCGAGTC 13675 Query 2606 CGAACTCAAGATCTACCTGCCCAACGGGACCGAGATTCACATCATCGGTCTGGACCAGGA 2665 || || | ||||||||| |||||| | |||||| ||| ||||||| || ||| || Sbjct 13676 GGACCTGATCATCTACCTGGACAACGGTAGCGAGATCCACGTCATCGGGCTCGACAAG-- 13733 Query 2666 CCAGCCCCAGCGGATTGAAGGTATCAACTGGACAGGCGGTGTGATCGACGAAATTGCGGA 2725 || ||||||||||| ||||| |||||| ||||| | || |||||| | || || Sbjct 13734 ----CCGCAGCGGATTGAGGGTATACCCTGGACTGGCGGGGGCATTGACGAATTCGCCGA 13789 Query 2726 CGTGAAGGGTGAGGCGCTGCAAGCGAACATCATGCCCGCGCTCAACACCGTGAATCCGAC 2785 | | ||| || || | | || ||||| | || ||||| ||||| || || || || Sbjct 13790 CATTAAGCCGGACGCATGGGAGGCAAACATTCTCCCGGCGCTGAACACTGTCAACCCAAC 13849 Query 2786 GCGCCCGTACTATCGGGCCTGGTGCTGGTTCATTGGTGTGCCCGACGGTCTGAACCACTA 2845 ||| | || ||||||||||||||||| | || || || ||||| |||||||||| Sbjct 13850 CATGCCGGATTACCGGGCCTGGTGCTGGTTGCTCGGCGTACCTGACGGCTTGAACCACTA 13909 Query 2846 TTACGACATG-GCGGAATATGCACGC----ACCGCCAACGACCCCGACTGGGCGCTGTTC 2900 |||||| || || ||||| || | | ||| ||||| ||| | ||||| Sbjct 13910 CTACGACCTGTGC-----ATGCAGGCCGAATCAGGCAATGACCCAAACTTCCGGGTGTTC 13964 Query 2901 CACTGGACGTCGGAAGAGATTCTCCCGCCAGACGTCATTGAAGCTGCGAAGCGCACCATG 2960 || |||| |||| |||||||| ||| | ||||| || || || |||||| ||||| Sbjct 13965 CATTGGAAATCGGCCGAGATTCTTCCGGCTGACGTAATGGACGCAATGAAGCGGGCCATG 14024 Query 2961 TCGCGGAAGCAGTACAATCAGGAATATCGAGCGAGCTTCGAGACCGCCAGCGGTCGTATC 3020 ||| ||||||| ||| ||||||| | ||| ||||| || || || || ||| Sbjct 14025 TCGGCCAAGCAGTTCAAGCAGGAATTTGAAGCATCGTTCGAAACGGCGTCTGGCCGGATC 14084 Query 3021 TATGAGGACTACTCGAAAGAGAATTTCACAACCGA-GCGG--ATCCTCCCTCACGAAGCG 3077 || ||||||||| |||| ||| ||| ||||| || | || || || || | Sbjct 14085 TACGAGGACTACAGCAAAGCGAA---CACCACCGATGCAGCCATTGAGCCGCATGAGCAG 14141 Query 3078 CTGCACTGGACGCACGACCAGAACTTCACCCCGCTGAGCTCGGCTATTGTGGTCATCCGC 3137 ||| |||| ||||||||||||||| || || ||| || || || | ||| ||| Sbjct 14142 CTGATGTGGATGCACGACCAGAACTTTACGCCTCTGTCATCTGCGATCGGTGTCCGGCGC 14201 Query 3138 A---ATGG---AGTCCCCTTCTTCCTCGATGAGATCGTTCTTGAGAGCGCAGTGAGCCGG 3191 | |||| || || || | || ||||||||||| || ||||| || | Sbjct 14202 AACGATGGCAAAGACCTCTATCTGCTGGATGAGATCGTGCTGATCAGCGCTGTTTCGAAG 14261 Query 3192 CAGTCGGCAATCGAGTTCGTTGAGAAGTACAAGGAACACAAGAACAAGACAGTCTATATC 3251 |||||||| |||||||| || |||| ||||| ||||| |||||| ||| ||| Sbjct 14262 CAGTCGGCTGCTGAGTTCGTGGACAAGTTTAAGGATCACAAAAACAAGCACGTCCTGATC 14321 Query 3252 TACGGTGACCCAGCGGGTCGCGCGGGTGAGAAGCACGGGCACAAATCCGATTACACTGAG 3311 ||||| ||||| ||||| || || ||||||||||||||| |||||| ||||| || Sbjct 14322 TACGGCGACCCGGCGGGCAAGGCTGGCGAGAAGCACGGGCACGCATCCGACTACACCGAC 14381 Query 3312 ATCGAAGACGTGCT--ACGCTTGCACGGCTGGAAGTTCGAGCGGCGCGTGCGTCCTGCGC 3369 || || | |||| | | ||| | ||||||| || | ||| || || |||| Sbjct 14382 ATTGAGGGCGTGTTGAAGGCT--AATGGCTGGACGTACACGCGCAAGGTCAAGCCGGCGC 14439 Query 3370 ACCCTGCTATCAAGGACCGCCAGAACGCTGTACGTGCGATGATCTGCAATGCGAAAGGCG 3429 | || | || ||||| || |||||||| || || |||| |||| || || ||||| Sbjct 14440 ATCCATCCATAAAGGATCGGCAGAACGCCGTCCGGGCGAAGATCCTCACCGCCTCAGGCG 14499 Query 3430 AAGTGAGGTTGAAGGTGAATCCTCAGACTGCGCTGTGGTGCCACAAAGGCTTGAGCACTG 3489 || || || | || ||| || || | ||||| ||||| || ||||| || | Sbjct 14500 AAACCAGCCTGTTCATCAACCCTGTCACCGCTCCCTGGTGTCACAAGGGGTTGAGTACGG 14559 Query 3490 TGCAGCTCCAGGCAGGTTCGTCTTTCCAAGAGGATCAAAAGAACCAGTATCAGCACATCA 3549 | ||||| || || ||| | |||||||| || || || ||| | || |||||||||| Sbjct 14560 TTCAGCTTCAAATGGGCTCGACCTTCCAAGAAGACCAGAAAAACGACTACCAGCACATCA 14619 Query 3550 CCACAGCGATCGGGTATTTTATTGAC 3575 |||| |||||||| |||| || ||| Sbjct 14620 CCACGGCGATCGGCTATTGCATCGAC 14645 >seq1152 Length=9820 Score = 129 bits (142), Expect = 2e-25 Identities = 273/403 (68%), Gaps = 12/403 (3%) Strand=Plus/Plus Query 30980 CCCTGCTGGCAGATGCCACGGGATTCCATGCACATGTGTC----GCGCCTTAATGACCAC 31035 ||| || || |||||| ||| ||||||||||| ||| | |||| | |||||| Sbjct 3871 CCCGGCGTGCGGATGCCGCGGCTTTCCATGCACAGGTGACGGCAGCGC----ACGACCAC 3926 Query 31036 ACCGACGCCCTTGGCTTCCAGGTGCTCGAACAGTGCGTCCGCGATCTGGTCTGTGAGCCG 31095 || || || | |||||| ||| | ||| || | |||||||| || | || Sbjct 3927 GCCCACCGATTTTGGTTCCAGCACCTCCATCAGGGCATTGGCGATCTGCATCGTCATGCG 3986 Query 31096 TTCCTGCACTTGCAGGCG--GCGAGCATACATGTCCGCCAGGCGGGACAGCTTGCTCAGG 31153 |||||||||||||||||| ||| | || ||| | ||||| | ||| || |||| Sbjct 3987 TTCCTGCACTTGCAGGCGCTTGGAG-AAGCA-GTCGACGAGGCGCGTCAGTTTCGACAGG 4044 Query 31154 CCCACGATACGACCGTTCGGAATGTAGCTGATCGTGACCGTGCCGAAGATCGGCGCGAGG 31213 || ||||| || ||||| | ||| | ||| ||| || ||||||||| ||| || ||| Sbjct 4045 CCGACGATCTTGCCATTCGGCACGTAACCGATGGTGGCCTTGCCGAAGAACGGTGCCAGG 4104 Query 31214 TGATGCTCGCAATGTGAGTAGATGGGGATGTCGCGCACCGTCACCATCTGGTCATGCTTC 31273 || || |||||||| |||| ||| ||| ||||||| | || || || | | Sbjct 4105 TGGTGTTCGCAATGGCTATAGACGGGAATGCCGCGCACGACGATCAGCTCGTTGTATTGT 4164 Query 31274 TCCGCACCGTCTTCGAACACCTTCAGGATGGCCTTCGGATCCTTGCCGTAACCGCCGCAC 31333 ||||| || |||||||| | ||||| | | | |||| || ||| || || | | Sbjct 4165 TCCGCGCCATCTTCGAAGGCTTTCAGCAGGTCGACAGGATTCTGGCCATAGCCCGAGGTC 4224 Query 31334 CAGTGGCGCCAGGCCTTAGCGACGCGATGCGGAGTCTCGAGCA 31376 ||||| |||||| || || ||||| ||| || || |||| Sbjct 4225 CAGTGTTTCCAGGCTTTCGCCACGCGCGCCGGGGTTTCCAGCA 4267 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 187258451983680