Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_031074.1 Length=92580 Score E Sequences producing significant alignments: (Bits) Value seq7603 385 3e-102 seq6140 131 1e-25 seq3603 104 1e-17 seq58 102 5e-17 >seq7603 Length=749 Score = 385 bits (426), Expect = 3e-102 Identities = 502/685 (73%), Gaps = 12/685 (2%) Strand=Plus/Plus Query 788 TACGAAGACCTGTTGCGCGACATCCTGGAGACTGGCAAGTCGAAGGATGATCGCACCGGC 847 ||||||||||| | || | || ||||||| || | | || ||||| ||||| Sbjct 63 TACGAAGACCTCCTCCGGCTCGTCATGGAGACGGGTACCGCCAAATCCGATCGAACCGGA 122 Query 848 ACCGGCACGCTGAGCAAGTTCGGCGCCCAGCTGCGGTACGACCTCACCGAGGGCTTCCCG 907 |||||||| | |||| ||||| |||| |||| | ||| || |||| ||||| ||| Sbjct 123 ACCGGCACCCGCAGCATCTTCGGTCACCAGATGCGTTTCGATCTTGCCGACGGCTTTCCG 182 Query 908 CTGGTCACCACGAAGCGCGTCCACTTCAAATCGGTTGCGTACGAACTTCTGTGGTTCCTC 967 || |||||||| ||| |||||| |||| ||| | | ||||||| ||||||||||| Sbjct 183 CTCGTCACCACCAAGAAGGTCCACCTCAAGTCGATAGTCAACGAACTCCTGTGGTTCCTG 242 Query 968 AGTGGCGACACGAACGTGAAGGCGCTCAACGACAACGGCGTCACCATCTGGGACGAGTGG 1027 | |||||| | |||||| | ||| |||| |||||||| ||||||||||||||||| Sbjct 243 CGCGGCGACTCCAACGTGGCGTGGCTGCACGAGCACGGCGTCTCCATCTGGGACGAGTGG 302 Query 1028 GCCGACGCCGGCGGAAACCTCGGTCCTGTCTACGGCGCGCAGTGGCGGCACTGGCATGTC 1087 ||||||| ||| | ||||| || |||||||||| |||||||| ||||| | Sbjct 303 GCCGACGAGAACGGTGAACTCGGCCCCGTCTACGGCGTCCAGTGGCGTAGCTGGCCCACC 362 Query 1088 GAGGACGGAGGATCGTCGTGGATTGACCAGATCTCGGCCGCCGTGGAGCTGCTTCGCGAG 1147 ||| || | || ||||||||| || |||| ||| || ||| Sbjct 363 CCTT-CGGGCGAGCAC-----ATCGACCAGATCACGCAGACCGTCGAGACTCTGCGCTCC 416 Query 1148 GACCCTGACTCGCGCCGGAACGTGGTATCCGCATGGAACGTCGGTGACCT-CAGCGACAT 1206 |||| || ||||| |||| | | || || || |||||||||| ||| | | || | || Sbjct 417 AACCCCGATTCGCGGCGGATCATCGTTTCGGCGTGGAACGTCGCCGACATTCCGC-AGAT 475 Query 1207 GGCACTTCACCCGTGCCACATCATGTTCCAGCTGTACGTCGTCGACGGCCGGCTCTCGCT 1266 ||| || ||||||||| | |||||| | ||||||| ||||||| |||||| || Sbjct 476 GGCCCTGGCGCCGTGCCACGCTTTCTTCCAGTTCTACGTCGCCGACGGCAAGCTCTC-CT 534 Query 1267 GC-AGGTCTACCAGCGCAGCGCGGACATGTTCCTCGGTGTGCCGTTCAATATCGCCTCGT 1325 || || | |||||||||||||| |||||||||||||| || |||||||| |||||| | Sbjct 535 GCCAGCTGTACCAGCGCAGCGCCGACATGTTCCTCGGCGTTCCGTTCAACATCGCCAGCT 594 Query 1326 ACGCGCTCCTCGCGCACATGTTCGCGCAGCAGGCCGGCCTGCGGGTGGGTGAGCTGATCT 1385 ||||||| ||| | |||||| | || ||||||||||| || || || ||| | ||| Sbjct 595 ACGCGCTGCTCACCCACATGATGGCCCAGCAGGCCGGACTCGACGTCGGCGAGTTCGTCT 654 Query 1386 GGACCGGCGGCGACTGCCACATCTACAACAACCACGTCGACCAGGCG-CTGATGCAGCTC 1444 |||||||||||||||||||||||||| |||| ||||||||||||| | | || ||||||| Sbjct 655 GGACCGGCGGCGACTGCCACATCTACGACAATCACGTCGACCAGGTGACCGA-GCAGCTC 713 Query 1445 CGCCGACGACCGCGGCCCTACCCGA 1469 |||| ||||| ||| | |||| Sbjct 714 GGCCGCGAACCGCTGCCGTTGCCGA 738 >seq6140 Length=1248 Score = 131 bits (144), Expect = 1e-25 Identities = 342/505 (68%), Gaps = 30/505 (6%) Strand=Plus/Minus Query 948 ACGAACTTCTGTGGTTCCTCAGTGGCGACACGAACGTGAAGGCGCTCAACGACAACGGCG 1007 |||| || ||||||||||| | ||||| |||||| | ||||| || ||||||| Sbjct 844 ACGAGCTGCTGTGGTTCCTGAAAGGCGAAACGAACATCGCCTATCTCAAGGAAAACGGCG 785 Query 1008 TCACCATCTGGGACGAGTGGGCCGACGCCGGCGGAAACCTCGGTCCTGTCTACGGCGCGC 1067 | || |||||||| || |||||||||| ||| | ||||| || ||||| ||| | Sbjct 784 TGACGATCTGGGATGAATGGGCCGACGAGAACGGCGATCTCGGGCCGGTCTATGGCTATC 725 Query 1068 AGTGGCGGCACTGGCATGT---CGA-GGACGGAGGATCG-TCGTGGATTGACCAGATCTC 1122 ||||||| ||||| || ||| || ||| |||| || ||||| | ||||| Sbjct 724 AGTGGCGCTCCTGGCCTGCGCCCGACGGCCGGCATATCGATCA--GATTG--CGAATCTC 669 Query 1123 GGCCGCCGTGGAGCTGCTTCGCGAGGACCCTGACTCGCGCCGGAACGTGGTATCCGCATG 1182 | | | || || | |||| | ||||| || | || |||||||| Sbjct 668 GTCAGT------GCGATAAAGCAAAATCCCT-ATTCGCGGCGTCTGATCGTTTCCGCATG 616 Query 1183 GAA--CGTCGGTGACCTCAGCGACATGGCACTTCACCCGTGCCACATCATGTTCCAGCTG 1240 ||| || || | | || || ||||| || | || |||||| | |||||||| | Sbjct 615 GAATCCGGCGCT--CGTCGATGAAATGGCGCTGCCGCCCTGCCACTGCCTGTTCCAGTTC 558 Query 1241 TACGTCGTCGACGGCCGGCTCTCGCTGC-AGGTCTACCAGCGCAGCGCGGACATGTTCCT 1299 ||||| | |||||| ||| || |||| || ||||||||||| ||| || || || || Sbjct 557 TACGTGGCCGACGGAAAGCTTTC-CTGCCAGCTCTACCAGCGCTCCGCCGATATCTTTCT 499 Query 1300 CGGTGTGCCGTTCAATATCGCCTCGTACGCGCTCCTCGCGCACATGTTCGCGCAGCAGGC 1359 ||| ||||||||||||||||| || || || || || | | |||| | |||||| | Sbjct 498 CGGCGTGCCGTTCAATATCGCATCCTATGCCCTGCTGACCCTCATGGTGGCGCAGGTCAC 439 Query 1360 CGGCCTGCGGGTGGGTGAGCT-GATCTGGACCGGC--GGCGACTGC-CACATCTACAACA 1415 || |||| | |||||| | | || || || ||||| ||| || |||| || Sbjct 438 GGGTCTGCAGCCGGGTGATTTCGTTC---ACACGCTGGGCGA-TGCGCATCTCTATGCCA 383 Query 1416 ACCACGTCGACCAGGCGCTGATGCA 1440 |||| |||| ||||||| | |||| Sbjct 382 ACCATTTCGAGCAGGCGCGGCTGCA 358 >seq3603 Length=4408 Score = 104 bits (114), Expect = 1e-17 Identities = 138/188 (73%), Gaps = 3/188 (2%) Strand=Plus/Plus Query 41799 GAAGATCTCCTGCCGTTCAGCGGCGAGAAGATCGTGC-GCGCCGCGATCTCCTGCACCAC 41857 || ||||||||||||||| || ||| | | |||| ||||| | ||||||| || Sbjct 273 GAGGATCTCCTGCCGTTCTCCGACGAAGCGCT-GTGCCGCGCCATCGTGGCCTGCACGAC 331 Query 41858 GCCTGTCGTCTCGGCCATCGGCCACGAGCCTGACAATCCCGTCCTGGACGACGTCGCCGA 41917 ||| ||||| |||||||| |||||||| |||| || || ||| |||||||||| Sbjct 332 GCCGATCGTCAGTGCCATCGGACACGAGCCGGACAGCCCGCTCAGTGACCACGTCGCCGA 391 Query 41918 CTTCCGAGCCGCAACACCGACCGACGCCGCGAAGAACGTCGTGCCCGACATGGTCGCCG- 41976 | | || || || ||||| || ||||| || ||| |||||| |||||| ||| || | Sbjct 392 CCTGCGCGCAGCCACACCCACGGACGCGGCCAAGCGCGTCGTACCCGACGCGGTTGCGGA 451 Query 41977 AGCTGTCC 41984 ||||| || Sbjct 452 AGCTGCCC 459 >seq58 Length=338205 Score = 102 bits (112), Expect = 5e-17 Identities = 186/270 (69%), Gaps = 2/270 (1%) Strand=Plus/Minus Query 830 AAGGATGATCGCACCGGCACCGGCACGCTGAGCAAGTTCGGCGCCCAGCTGCGGTACGAC 889 |||| || ||||||||||||||||| | | ||| | | ||| | ||| | | Sbjct 80855 AAGGGCGACCGCACCGGCACCGGCACCAAGGCCGTGTTTGCCCGTCAGTTTCGGCATAGC 80796 Query 890 CTCACCGAGGGCTTCCCGCTGGTCACCACGAAGCGCGTCCACTTCAAATCGGTTGCGTAC 949 | |||| |||||||||||| | ||||| ||| | ||||||||| | || | Sbjct 80795 TTGGCCGACGGCTTCCCGCTGCTGACCACCAAGAAGCTTCACTTCAAAAGCATCGCCAAT 80736 Query 950 GAACTTCTGTGGTTCCTCAGTGGCGACACGAACGTGAAGGCGCTCAACGACAACGGCGTC 1009 ||| | | ||| | | |||||| |||| ||| | ||| ||| ||||| || ||||| Sbjct 80735 GAATTGATCTGGATGTTGAGTGGCAACACCAACATCAAGTGGCTGAACGAAAATGGCGTG 80676 Query 1010 ACCATCTGGGACGAGTGGGCCGACGCCGGCGGAAACCTCGGTCCTGTCTACGGCGCGCAG 1069 ||||||||||| |||||| || | ||| |||| || || || ||||||| |||| Sbjct 80675 CGTATCTGGGACGAATGGGCCACCGAAGACGGCGACCTGGGCCCGGTGTACGGCGAGCAG 80616 Query 1070 TGG-CGGCACTGGCATGTCGAGGACGGAGG 1098 ||| | || ||||| | ||||||| || Sbjct 80615 TGGACCGC-CTGGCCCACCAAGGACGGCGG 80587 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 296080654568505