Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_031078.1 Length=50082 Score E Sequences producing significant alignments: (Bits) Value seq2405 664 0.0 seq845 138 4e-28 seq11514 91.5 5e-14 >seq2405 Length=2039 Score = 664 bits (736), Expect = 0.0 Identities = 1385/2029 (68%), Gaps = 58/2029 (3%) Strand=Plus/Plus Query 39421 TGTGCGAGCCCACGCCCATCGGACCCGGACGGTACAGCGCGACGACGGCGCTGATGTCCT 39480 |||| | | |||| |||||||| ||||| || |||||||| | | ||||| |||||| Sbjct 14 TGTGGGCGTCCACACCCATCGGTCCCGGTCGATACAGCGCCAAGGCGGCGACGATGTCGC 73 Query 39481 CGAAGTTGTCCGGCTTCAGCAGGCGGAGCAGTGAGCGCATCGCGCCGCCGTCGAGCTGGA 39540 |||| | |||| || ||| |||| |||||| |||||||||||||||||| Sbjct 74 CGAATCCGGTGGGCTGCATCAGTTTCAGCAACTCGCGCATACCGCCGCCGTCGAGCTGGA 133 Query 39541 AGACCGAGAGCGTGTCGCCCCTGGCCAGCAGCTCGTAGGTAGCAACGTCGTCCAGCGGGA 39600 | || ||| ||||| || | ||| ||||| ||||| || || | ||||||| ||| | Sbjct 134 ACACACCGAGAGTGTCACCGCGGGCGAGCAGTTCGTATGTTGCCGCATCGTCCATCGGCA 193 Query 39601 TGTTCTCCAGGTCGACGTGCTCCCCACGGTTGGCGCGGATGTTCTCGACCGCGTCGCCCA 39660 | || ||||||| || || |||||||| ||||||||||| || |||||| | Sbjct 194 AAGTGTCGAGGTCGAGGTCGATGCCGCGGTTGGCTTTGATGTTCTCGAGCGTGTCGCCGA 253 Query 39661 TGATCGTGAGGTTCCGGAGCCCGAGGAAGTCCATCTTCACCGCGCCCA-GGCTCTCGCAC 39719 ||| ||||||||| || || ||||||||||||||||| | | ||| | |||| || ||| Sbjct 254 TGACCGTGAGGTTTCGCAGACCGAGGAAGTCCATCTTGAGCAGGCCGATGGCT-TCACAC 312 Query 39720 TGGGGGTAGTCCCACTGCGTCACGGTCACGCCGTCCGCAGGGCGGACCCACACCGGGAGG 39779 |||||||||||| || | | | |||||||| | ||| ||| ||||||| Sbjct 313 GAAGGGTAGTCCCACCCGGTGATGATTGCGCCGTCCTGGGCGCGCTTCCAGACCGGGATT 372 Query 39780 TGATCGACCAACGGCTCGTTGGACATGATCACACCGGCCGCGTGAACGCCCATCTGCCGG 39839 ||| | ||| ||| |||||||| || || ||||| || || | ||| Sbjct 373 GCGTCGGTGAGCGGTTCGGACGACATGATGACCGCGCAGGCGTGCACACCGGCGTTACGG 432 Query 39840 ACGAGACCTTCGAGCCCGAGCGCAGTGTCGATGACCTGCTTCGA-GTCCGGGTCGTTCTC 39898 | || || || || || | |||||| | | || || | ||| ||||||| | || Sbjct 433 ATCAGCCCCTCCAGACCCACCGCAGTCTTGTAGATCTTCG-CGACGTCCGGGCTGGAGTC 491 Query 39899 GTACAGCCCACGGATCTCGCCCGCCTCGTCGTAGCGCGGGTGCTCCGGGTTGAAGATGCC 39958 | || | || | |||| | ||||| | ||| ||| ||||| ||| | | ||| || Sbjct 492 GATGAGTGCTCGAACCTCGACGGCCTCCTTGTACCGCTCGTGCTTCGGATCGGTGATACC 551 Query 39959 CTCCAGGGGCATCGAGTTGCCCATCACGTCGGCCGGGTACGCCTTGGTCAGCTTCTCGCC 40018 | | || ||| |||| | | | |||| |||||||| | || ||| | Sbjct 552 GGAGACAGAGATGTCCTTGGCCATGATGGGCGGCGGGAGTGCCTTGGTGATCTGATCGGC 611 Query 40019 GACCTGGAAG---GGCTTGTCCAGC---ACGCGCGCCGCGTCCTTCATCGCG---TTGCG 40069 || |||| |||||| | | | ||||| |||| |||||| || || ||| Sbjct 612 GATGGCGAAGCCCGGCTTGCCGAACTGGACGCGAGCCGAGTCCTTGATGGCAGCCTTG-- 669 Query 40070 CGCCTTGATCCGACCGAAGGTCCCGATCTGTGCGACCTTGTC--CGCCCCGTACTTCTCG 40127 | |||||| |||||||| || ||| ||||||||||| ||||| |||| || Sbjct 670 -GTCTTGATGGTGCCGAAGGTGATGACCTGGGCGACCTTGTCGTTGCCCC--ACTTGTCC 726 Query 40128 GTGACGTACCTGATCACGTCGCCCCGTCGCCGGTCATCGAAGTCGATGTCAACGTCGGGC 40187 || |||| | | || ||||| || || || |||||||||||||| || | |||||| Sbjct 727 GTCGCGTAGCGAACCATCTCGCCGCGACGGCGATCATCGAAGTCGATATCGATATCGGGC 786 Query 40188 ATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGATGAGCCCGTGCGGGATGGGGTCC 40247 |||||||| ||||||||||| ||||| |||||||| | | ||||| |||||||||||| Sbjct 787 ATGGACACACGCTCGGGGTTGAGGAATCGCTCGAACAGCAACCCGTACGGGATGGGGTCG 846 Query 40248 AGGTCTGTGATGCCGAGGCAGTAGGCGACCAGCGAACCGGCAGCCGAGCCACGTCCGGGT 40307 | || ||||| || | |||||| |||| ||||||||||||||| ||||| ||||| Sbjct 847 ATGTTGGTGATACCCATCGCGTAGGCCACCAACGAACCGGCAGCCGATCCACGGCCGGGC 906 Query 40308 CCGACCCACACGCCGTTCTCCTTGGCCCAGCCGATGAAGTCGGCGACGACCAGGAAGTAG 40367 ||||| | | ||| |||||||| | ||| | |||| |||| || ||||||||| Sbjct 907 CCGACACGGATCCCGACGTCCTTGGCGTGGTTGATCAGGTCGCCGACCACGAGGAAGTAG 966 Query 40368 GACGGGAACCCCAGCTGGATGATCATGTCGATCTCGTACTGAAGCTGCTTGCCA--TGCT 40425 | |||||| |||| | | |||| | | |||||||||| | | || || | | || Sbjct 967 GCCGGGAAGCCCATTTCGTTGATGACGCCGATCTCGTA--GTCGGCGCGGGCGAGGTACT 1024 Query 40426 CGT-AGTCGGTCCCGTTCGGGAACCGTCGAGCTGCACCACGGTGGACCTCGTCCTCGAAC 40484 | | | |||| ||| ||||||| || ||| | || || |||||| | | Sbjct 1025 CCTGCGGCGGT-CCGCTCGGGAAGCGGCGATCGAGTCCGCGCATCACCTCGGCGCGCAGG 1083 Query 40485 CACGTAACCTCGGTGTGACCCTCGGGCACGGGGAAGCGGGGCATGAGGTC--GGTGTGCT 40542 | || || ||||| ||||| || || || ||| |||||| |||| || || Sbjct 1084 AAGGTCTGCTGCGTGTGTCCCTCCGGGACCGGAAAGATCGGCATGCGGTCGTGGAACGCC 1143 Query 40543 CGAACATGCCAGT-CGTGTCGACGCGCTCGGCGATCTCCAGCGTGGT-CCGCAT-CCCCC 40599 | || | | || || | || |||||| |||| | | ||| | ||||| ||||| Sbjct 1144 CACACGTCCTCGTACGACTGCACACGCTCGCCGATGGCAACGGTGTTGTCGCATGCCCCC 1203 Query 40600 ACT-CCCAGATGGGAGAGGAGTCGATGGCCGCCATCTCGGCGGCCGACTTGATGTAGTAC 40658 | || | || | |||||| ||||||||| || ||||||| |||||| Sbjct 1204 GGTACCTCGTTGTCCCA------GATGGCGCGCATCTCGGCAGCGGACTTGAGGTAGTAG 1257 Query 40659 CCGGAGCCCTCGAACCGGAAGCGGTTCGGGTTGTCGATCGTCGTGCCGGTCTGGACGCAG 40718 ||| ||| |||||| |||||| | |||| | || |||| |||||||||| | |||| Sbjct 1258 CCGTCGCCGTCGAACTTGAAGCGAGTGGGGTCGGAGAGCGTCTTGCCGGTCTGAATGCAG 1317 Query 40719 AGCAGAGCGTCGTG---CGCGGTGCTCTCCTCGGCCGTGACGTAGTGCGAGTCGTTCGTG 40775 ||||| || ||||| | ||| | |||| | |||||||| || ||||||| ||| Sbjct 1318 AGCAGCGCCTCGTGATTCTCGGCGGCGTCCTTG---GTGACGTAATGGCAGTCGTTGGTG 1374 Query 40776 ACCACGGGGGTGAGCGCGAGGTGCTTGCCCA-GCCGGTAG-AGGTCGTCGCGGACACGCC 40833 | | || | | |||| |||||||| | | || || || | || || ||||| | Sbjct 1375 GCAAGTGGCGGAATACCGAGTTGCTTGCCGATGTCG--AGCAGACCCTCTCGCACACGGC 1432 Query 40834 GCTCGATCTCCAGGCCGTGGTCCATGATCTCCAGGAAGTACCGGTCCCGACCGAAGACCT 40893 |||||||| || ||||| ||||| | || |||||| | |||| | || ||| || Sbjct 1433 GCTCGATCGAGAGACCGTGATCCATCAGTTCGAGGAAGAAGTTGTCCGGGCCCCAGATCT 1492 Query 40894 CCAGGTAC--CG-GCCAGCCTCGGCAACGGCCTCGTCGTACTGCCCGAGGTTGAGCCGGG 40950 || | || || | |||| ||| | |||||| | || ||||| || |||| Sbjct 1493 CCTGCCACTTCGCGGCAGCTTCG---AGAGCCTCGCGATCGTGACCGAGACGAAGGCGGG 1549 Query 40951 TCATGATCGCACCGCCAGGGCATCCCGTGGTGACGATCAGGCCCTCGTTGTGCTCGGCGA 41010 || |||| ||||| ||||| |||||||| |||| | ||||||| |||| |||||| Sbjct 1550 TCTGGATCTCACCGGACGGGCAACCCGTGGTCGCGATGATGCCCTCGGCGTGCGCGGCGA 1609 Query 41011 CCAGGTCGAAGTCCATGCGCGGGTACTTCCCGAGCAGGCCCTCCTGGTACGAGCGGGAGC 41070 || || |||||| || || | || |||||| ||||||| | ||| | | || Sbjct 1610 TGAGCTCCTCGTCCATCCGTGGCCATTTACCGAGCTGGCCCTCGATGGACGCGAGCGACG 1669 Query 41071 TGAGCTTCATGAGGTTGTGCAGGCCGGTCTTGTTCTCCGCGAGGATCGTGAGGTGCGTGT 41130 ||||| | ||||||| | || |||||| |||||| || | ||||| | ||| |||| Sbjct 1670 ACAGCTTGAAGAGGTTGCGGAGTCCGGTCGCGTTCTCGGCCACCATCGTCATGTGGGTGT 1729 Query 41131 ACGCACCGCGACCGCTCACGTCGTAACGCTTCTGGTCCTCGGT-GCCCCACTTGACGCGC 41189 ||||||||| |||| ||||||| ||||||| | || | |||||| || ||| Sbjct 1730 ACGCACCGCTACCGGAGACGTCGTCGGACTTCTGG-CTGCGATCTCCCCACAGAACTCGC 1788 Query 41190 TCCTGGTCGAAGCGCGAGCCCGGAGCCATGTACGCCTCGATGCCGATGATCGGCTTGACC 41249 | || |||||| || | || || ||||| ||||||||||||||||||||||||| Sbjct 1789 TTGGTGTTGAAGCGAGACTCGGGTGCGATGTAGGCCTCGATGCCGATGATCGGCTTGATG 1848 Query 41250 CCAGCGGCCTGAGCCGTGGTGAAGAAGTCGTGGGCACCGTGCAGGTTGCCGTGGTCAGTG 41309 || ||| || ||| | || |||| | | ||| |||| || ||| |||||||| || Sbjct 1849 CCGGCGCTCTTTGCCTCGTTGTAGAACTGGCTGGCGCCGTACATGTTTCCGTGGTCGGTC 1908 Query 41310 ACTGCGACTGCCGGGGAGCCCTGTCGGGCAACCTCGGCGACCATTTGCTTC-ATCCGAGC 41368 | ||||||| | | | || || |||| ||| || | || | | | || Sbjct 1909 ATGCCGACTGCGGTCATTTCGAGACGAGCGGCCTCCTCGAACA-TGGCGCCGACCTTGGC 1967 Query 41369 GGCCCCGTCGAGGAGCGAGTACTCGGAGTGGTTGTGGAGGTGGACGAAC 41417 || |||||||| | ||||||||||| ||| ||||| || || |||||| Sbjct 1968 CGCACCGTCGAGCATCGAGTACTCGGTGTGATTGTGAAGATGTACGAAC 2016 >seq845 Length=90334 Score = 138 bits (152), Expect = 4e-28 Identities = 241/348 (69%), Gaps = 12/348 (3%) Strand=Plus/Minus Query 40034 GTCCAGCACGCGCGCCGCGTCCTTCATCGCG---TTGCGCGCCTTGATCCGACCGAAGGT 40090 ||||| |||||| || |||| |||||| ||| |||| || | ||||||||| Sbjct 48173 GTCCATCACGCGGCCCACGTCGCGGATCGCGCCCTTGGCCGCCATGGT---ACCGAAGGT 48117 Query 40091 CCCGATCTGTGCGACCTTGTCCGCCCCGTACTTCTCGGTGACGTACCTGATCACG---TC 40147 ||||||| | |||| ||| || ||| || |||||| | || ||| || Sbjct 48116 GGCGATCTGCGAGACCGCCTCCTTGCCATACAAATCCTTGACGTGCTGAATGACGCGGTC 48057 Query 40148 GCCCCGTCGCCGGTCATCGAAGTCGATGTCAACGTCGGGCATGGACACGCGCTCGGGGTT 40207 || || | | || | ||||| || || | ||||||||| || ||||| ||||| || Sbjct 48056 GCGCCCTTCCTGGCAA---AAGTCAATATCGAAGTCGGGCATCGAGACGCGTTCGGGATT 48000 Query 40208 CAGGAACCGCTCGAAGATGAGCCCGTGCGGGATGGGGTCCAGGTCTGTGATGCCGAGGCA 40267 |||||| |||||||| | || || | | || || ||||| || ||| || | Sbjct 47999 CAGGAAGCGCTCGAACAGCAGGTTGTATTGCAATGGATCGAGGTCGGTAATGAGCAGCGA 47940 Query 40268 GTAGGCGACCAGCGAACCGGCAGCCGAGCCACGTCCGGGTCCGACCCACACGCCGTTCTC 40327 || || |||||||||||||| |||| || || || || ||||| ||||||||| || Sbjct 47939 ATACGCCACCAGCGAACCGGCGCCCGAACCGCGGCCCGGACCGACGGGCACGCCGTTTTC 47880 Query 40328 CTTGGCCCAGCCGATGAAGTCGGCGACGACCAGGAAGTAGGACGGGAA 40375 ||||||||| ||| || ||||| |||| ||||||||| ||||| Sbjct 47879 CTTGGCCCACTGGATAAACTCGGCCACGATGAGGAAGTAGCCGGGGAA 47832 >seq11514 Length=332 Score = 91.5 bits (100), Expect = 5e-14 Identities = 108/144 (75%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 38922 ACGTCGGGCGGCAGGACG-TGAAGTCCCATCCGCCGTGCCTCGCCGAGGTACGTGGCCAT 38980 ||||| ||||| || ||| ||| | |||| | || ||| |||| || | || Sbjct 185 ACGTCCGGCGGGAGAACGGTGATG-CCCAACTTGCGGCAGTCGGCGAGATAGATCGCGGA 243 Query 38981 CTTGTTCTTGTCGTCGCCCACCGAGGTGAGCACGGCCGCCATGTACTCGGCCGGGTAGTG 39040 ||||| ||||||||| || || ||||| |||| |||||||||||||||||||||||| Sbjct 244 CTTGTCCTTGTCGTCACCGACGGAGGTCAGCAGACCCGCCATGTACTCGGCCGGGTAGTT 303 Query 39041 CGTCTTCAGGTACGCCGTGCGGTA 39064 || ||| |||||||| || | ||| Sbjct 304 CGCCTTGAGGTACGCAGTCCAGTA 327 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160114167083640