Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_031091.1 Length=43277 Score E Sequences producing significant alignments: (Bits) Value seq1811 150 5e-32 seq855 109 2e-19 seq816 96.9 1e-15 seq215 93.3 1e-14 >seq1811 Length=10690 Score = 150 bits (166), Expect = 5e-32 Identities = 258/367 (70%), Gaps = 22/367 (6%) Strand=Plus/Plus Query 9291 CAGGAGCGGCGGCGCCGCTGGA--GCCCAGAGCAAAAGCTGGCGATGGTTCGCGAGAGCC 9348 |||||||| || | |||||| ||| || | |||||| || | |||| ||||||| | Sbjct 4979 CAGGAGCGCCGCAGGCGCTGGTCTGCCGAG-GAAAAAGC-GGTGCTGGTACGCGAGA--C 5034 Query 9349 TT--GAGCCAGGACACAGCGTTTCGGTGGTGGCCCGGCGCAACGGCGTCAATGCCAATCA 9406 || |||||||| | ||| ||| |||| || || |||||||| ||| | || Sbjct 5035 TTACGAGCCAGGCATGAACGTGTCGCTGGTCGCTCGCAAGCACGGCGTCGGTGCAAGCCA 5094 Query 9407 ACTATTTCACTGGCGCAAGCTTTACCAGGACGGAAGTTTGTCGGCGGTCAGCGCCGGTGA 9466 | || ||||||||||||| | | ||| || | ||||||||| || || || Sbjct 5095 GTTGTTCAACTGGCGCAAGCTCGAACGGGAAGGCGCGCTAACGGCGGTCACTGCTGGCGA 5154 Query 9467 AGCCGTGGTGCCTGCGTCCGAGTTGAGCGATGCGCTCAGGCAGATTCGTGAGCTACAACG 9526 | | |||||||| ||| ||| || || ||||| | |||||| || | || || Sbjct 5155 ATCGGTGGTGCCGGCGAGCGAACTGGCCGCTGCGCGCGCGCAGATAGCCCAGTTGCAGCG 5214 Query 9527 GATGCTGGGCAAGAAGACGATGGAAGCCGAAGTCCTCAAAGAGGCCGTGGAGATAGCCCG 9586 ||||| |||||||| |||||||| || ||| |||| || |||||||| ||| | || Sbjct 5215 CATGCTCGGCAAGAAAACGATGGAGGCAGAAATCCTGAAGGAGGCCGTCGAGTT----CG 5270 Query 9587 CTCGCGAAAA----TGGATTGCGCACTCACCCTTGTTGCCGGG---GGACGGTCAGTGAA 9639 |||||||||| |||||||||| ||| ||||||| |||| ||||| ||||||| Sbjct 5271 CTCGCGAAAAAAAGTGGATTGCGCGCTCGCCCTTGT---CGGGCAAGGACGACCAGTGAA 5327 Query 9640 ACTGGTC 9646 | |||| Sbjct 5328 GCCGGTC 5334 >seq855 Length=103073 Score = 109 bits (120), Expect = 2e-19 Identities = 149/206 (72%), Gaps = 14/206 (7%) Strand=Plus/Plus Query 9448 CGGCGGTCAGCGCCGGTGAAGCCGTGGTGCCTGCGTCCGAGTTGAGCGATGCGCTCAGGC 9507 ||||||||| || || ||| | |||||||| || ||| || || ||||| | || Sbjct 80251 CGGCGGTCACTGCTGGCGAATCGGTGGTGCCGGCCAGCGAACTGGCCGCTGCGCGCGCGC 80310 Query 9508 AGATTCGTGAGCTACAACGGATGCTGGGCAAGAAGACGATGGAAGCCGAAGTCCTCAAAG 9567 || | | || | || || ||||| ||||||||||||||||| || ||| |||| || | Sbjct 80311 AGGTAGTTCAGTTGCAGCGCATGCTCGGCAAGAAGACGATGGAGGCGGAAATCCTGAAGG 80370 Query 9568 AGGCCGTGGAGATAGCCCGCTCGCGAAAA----TGGATTGCGCACTCACCCTTGTTGCCG 9623 | ||||| ||| | | |||||||||| |||||||||| ||| ||||||| || Sbjct 80371 AAGCCGTCGAGTT----CTCTCGCGAAAAAAAGTGGATTGCGCGCTCGCCCTTGT---CG 80423 Query 9624 GG---GGACGGTCAGTGAAACTGGTC 9646 || ||||| ||||||| | |||| Sbjct 80424 GGAAAGGACGACCAGTGAAGCCGGTC 80449 >seq816 Length=14434 Score = 96.9 bits (106), Expect = 1e-15 Identities = 283/431 (66%), Gaps = 14/431 (3%) Strand=Plus/Plus Query 10019 AAACTGAGCGTGACCTTTGCCCTGGACTGCTGTGATCGCGAAGCCATCGGCTGGGTGGCC 10078 |||||| | || || || ||||||||||| || ||||| |||||||| | ||||| || Sbjct 13323 AAACTGCGTGTTACGTTCGCCCTGGACTGTTGCGATCGTGAAGCCATAGACTGGGCCGCA 13382 Query 10079 AGCCCGACCGGCTAC-----AGCGGCGATGACATACGCGACTTGATGCTGGAAAGCG-TG 10132 ||| || || ||| |||| | || | || | ||| | | | ||| | Sbjct 13383 AGCACGGGAGGTTACGATAAAGCGACAGTG-----CAGGATGTCATGTTAGGA-GCGATA 13436 Query 10133 GAGAAGCGTTTTGGCGACCTACTGCCG-ACCACACCGGTGCAATGGCTAAGCGATAACGG 10191 || || || |||||||| | | ||| | || || | || ||||| | |||||||| Sbjct 13437 GAAAAACGCTTTGGCGATAAAGTACCGGAACAGTCCA-TCCAGTGGCTGACAGATAACGG 13495 Query 10192 TTCGGCCTACATCGCTGAACAGACGCGCCTGTTTGCTCGACAGATTGGCCTACAGCCAGT 10251 ||| || || | || | | || || | ||| || || || | || |||| Sbjct 13496 TTCAGCGTATAGAGCGCATGAAACACGGCAGTTCGCCAGAGAGTTGAATCTGGAGCCCTG 13555 Query 10252 GACCACGCCGGTACGCAGCCCGCAGAGCAACGGCATGGCAGAGAGCTTCGTTAAGACAAT 10311 || ||| | | |||| || ||||| || || |||||||| || ||||| || || || Sbjct 13556 CACAACGGCAATCAGCAGTCCTCAGAGTAATGGAATGGCAGAAAGGTTCGTGAAAACGAT 13615 Query 10312 CAAGCGCGACTACGTGGCGCACATGCCCAAGCCGGATCGAGAGACAGCCTTGCGCAACCT 10371 ||| |||||| | ||| |||||| || ||| || | || || |||| || || Sbjct 13616 GAAGGAAGACTACATCGCGTTCATGCCGAAACCGAATGTAAGAACGGCATTGCATAATCT 13675 Query 10372 GACGATTGCCTTCGAGCATTACAACGAGCAGCATCCGCACAGCGCCTTGAAATACCGCTC 10431 | | || |||| |||||||| || | ||||||||||| || || || ||||| Sbjct 13676 TGCAGTGGCGATCGAACATTACAATGAAAACCATCCGCACAGTGCGCTGGGTTATCGCTC 13735 Query 10432 GCCGAGGGAAT 10442 ||| | |||| Sbjct 13736 TCCGCGAGAAT 13746 >seq215 Length=48791 Score = 93.3 bits (102), Expect = 1e-14 Identities = 185/274 (68%), Gaps = 0/274 (0%) Strand=Plus/Plus Query 39243 CGAGCGCCGCGAGGTCAAGGTTCGGAAAGAGAAGTTGAAGAGTCGTGCAGACCACTTGAG 39302 ||||||| |||| ||||||| || || |||||| |||||| | || || ||| | | Sbjct 8507 CGAGCGCGCCGAGATCAAGGTCCGCAAGGAGAAGCTGAAGAACAGGGCGGATCACCTCAA 8566 Query 39303 GGAGGCTCAGGCCGCATTCAACGAGTTCATCCGCTGGCGCGACTGGGACCGCCCCTGCAT 39362 ||| | ||| ||||| || | | | ||| || || || | || ||| | Sbjct 8567 GGACACACAGCAGGCATTTAATGCCTGGGTTCGCGCCCGTGATGCGGCACTGCCATGCGT 8626 Query 39363 CAGTTGTGGGCGCTTTCATGATGGGCAGTATCACGCCGGGCATTACCGTTCCGTCGGCTC 39422 ||| || || ||| ||||| || || || |||||||| || ||||| | || || | Sbjct 8627 CAGCTGCGGCCGCCATCATGGGGGTCAATACCACGCCGGCCACTACCGCACTGTAGGAGC 8686 Query 39423 CCATCCCGAGTTGAGGTTCGACGAGGACAACGTCCACAAGCAATGCGCCCCATGCAACAA 39482 | || ||| ||||||| || | |||| | ||||| |||||||| |||||||| Sbjct 8687 GAACCCAGAGCTGAGGTTTGAGCCGCTGAACGCCTGGAAGCAGTGCGCCCCGTGCAACAA 8746 Query 39483 CCACAAGTCGGGAGACGTCGTGAACTACCGGATC 39516 |||| || ||| || || | || ||||| ||| Sbjct 8747 CCACCTTTCAGGAAACCTCATCAATTACCGAATC 8780 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 138341788636590