Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_031102.1 Length=42429 Score E Sequences producing significant alignments: (Bits) Value seq5284 98.7 3e-16 >seq5284 Length=2092 Score = 98.7 bits (108), Expect = 3e-16 Identities = 208/306 (68%), Gaps = 11/306 (4%) Strand=Plus/Minus Query 24013 CGTCCGGGTTCGGAGCTCGCTGGGGAACACAGCACCGCGGGCTCGACTTCGCCGCCAAGG 24072 ||||| |||||| ||||||||||||| | ||| || |||||||||||| | | Sbjct 1250 CGTCCCCGTTCGGGCCTCGCTGGGGAACCGAACACAAAGGCGTCGACTTCGCCGGCCCCG 1191 Query 24073 ACGGAACGCCGATCTATGCGGCGCAGGCCGGCACCGTGGCCTATATCGGGCCGGCGCAAG 24132 ||| || |||||||| ||||| | | |||| || || | | |||||| || | Sbjct 1190 TCGGGACACCGATCTACGCGGCACTCGACGGCGTCGCGGTCAAGGCCGGGCCCGCATCCG 1131 Query 24133 GCTTCGGGCAATGGATCGTGATTGACCACCCGGCCGCGGACGGC---GCCGGCACAACCG 24189 | |||||| | ||||||||| | | || || || |||||| | | | |||| Sbjct 1130 GGTTCGGGAACTGGATCGTGCT---CGACTCGCTCGTCGACGGCAAACCTGTGAGCACCG 1074 Query 24190 TCTACGGGCACATGTGGAACG-CGTTCGCGACCGGGCTCAAGGCCGGCGATCGCGTCCAG 24248 ||||||| ||||||| ||| || | | || | ||| || ||| | | ||| || Sbjct 1073 TCTACGGCCACATGTTCGACGACG---GTGTCCTCG-TCACGGAAGGCCAGCAGGTCAAG 1018 Query 24249 GCCGGCCAACTCATTGCCTACGTCGGCGCCAACGGGCAGTCGACGGGCCCGCACCTGCAC 24308 |||||| | | ||| || || |||| |||||| || || || ||| | ||| |||| Sbjct 1017 GCCGGCGACCACATCGCGAACATCGGAAACAACGGCCAATCCACCGGCGCACACTTGCAT 958 Query 24309 TTCGAA 24314 |||||| Sbjct 957 TTCGAA 952 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 135628639933710