Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_031107.1 Length=246291 Score E Sequences producing significant alignments: (Bits) Value seq362 138 2e-27 seq7603 129 9e-25 seq6140 113 7e-20 seq3838 93.3 7e-14 seq58 87.8 3e-12 >seq362 Length=339261 Score = 138 bits (152), Expect = 2e-27 Identities = 180/248 (73%), Gaps = 1/248 (0%) Strand=Plus/Minus Query 201841 AAAAGC-CGACCGTACCGGTACGGGCACCCTCTCTGTTTTCGGACGCCAGATGCGCTTTA 201899 |||||| |||| | || || || |||||| || | |||| || | |||||| | || | Sbjct 148597 AAAAGCACGACAGGACGGGAACAGGCACCATCAGTATTTTTGGCCATCAGATGAGGTTCA 148538 Query 201900 ACTTACAAGAAGGTTTTCCGCTGGTCACCACCAAAAAGGTTCACCTTCGTTCAATCATCC 201959 || | || ||||| ||||| ||||||||||||||||| |||| | || || |||| Sbjct 148537 ACCTCCAGGAAGGCTTTCCCCTGGTCACCACCAAAAAACTTCATTTAAAATCCATTATCC 148478 Query 201960 ATGAGCTGCTGTGGTTCCTCATGGGTGACACCAACATCCAGTATTTGAAAGACAACAACG 202019 | || ||| | ||||| | | || |||||||| || || |||||| ||||| | Sbjct 148477 ACGAACTGATCTGGTTTTTAAGTGGGGACACCAATATTGGCTACCTGAAAGCAAACAATG 148418 Query 202020 TCACCATCTGGGACGAATGGGCGGATAAAAACGGTGACTTAGGCCCGGTGTACGGTAAGC 202079 | | |||||||| || ||||| ||| ||||||||||| | ||||| || || || | Sbjct 148417 TAAAGATCTGGGATGAGTGGGCTGATGAAAACGGTGACCTGGGCCCTGTTTATGGATCAC 148358 Query 202080 AATGGCGT 202087 |||||||| Sbjct 148357 AATGGCGT 148350 >seq7603 Length=749 Score = 129 bits (142), Expect = 9e-25 Identities = 182/253 (72%), Gaps = 2/253 (1%) Strand=Plus/Plus Query 201842 AAAGCCGACCGTACCGGTACGGGCACCCTCTCTGTTTTCGGACGCCAGATGCGCTTTAA- 201900 ||| |||| || ||||| || ||||||| | | ||||| | ||||||||| || | Sbjct 105 AAATCCGATCGAACCGGAACCGGCACCCGCAGCATCTTCGGTCACCAGATGCGTTTCGAT 164 Query 201901 CTTACAAGAAGGTTTTCCGCTGGTCACCACCAAAAAGGTTCACCTTCGTTCAATCATCCA 201960 ||| | || || |||||||| ||||||||||| ||||| ||||| || || || | Sbjct 165 CTTGCC-GACGGCTTTCCGCTCGTCACCACCAAGAAGGTCCACCTCAAGTCGATAGTCAA 223 Query 201961 TGAGCTGCTGTGGTTCCTCATGGGTGACACCAACATCCAGTATTTGAAAGACAACAACGT 202020 || || ||||||||||| || ||| ||||| | || || | || || ||| Sbjct 224 CGAACTCCTGTGGTTCCTGCGCGGCGACTCCAACGTGGCGTGGCTGCACGAGCACGGCGT 283 Query 202021 CACCATCTGGGACGAATGGGCGGATAAAAACGGTGACTTAGGCCCGGTGTACGGTAAGCA 202080 | ||||||||||||| ||||| || | |||||||| | ||||| || ||||| || Sbjct 284 CTCCATCTGGGACGAGTGGGCCGACGAGAACGGTGAACTCGGCCCCGTCTACGGCGTCCA 343 Query 202081 ATGGCGTAGCTGG 202093 |||||||||||| Sbjct 344 GTGGCGTAGCTGG 356 Score = 86.0 bits (94), Expect = 1e-11 Identities = 105/141 (74%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 202490 CTTTCTTGTCAGCTCTATCAGCGTAGTGCGGACATGTTCCTTGGCGTACCGTTTAACATC 202549 || || || ||||| || ||||| || || ||||||||||| ||||| ||||| |||||| Sbjct 528 CTCTCCTGCCAGCTGTACCAGCGCAGCGCCGACATGTTCCTCGGCGTTCCGTTCAACATC 587 Query 202550 GCGTCTTACGCCTTGCTGGTACACATGTTTGCACAACAGG-CGAACATGGCGGTAGGCGA 202608 || ||||| |||| |||||| | || || |||| || || | | || ||||| Sbjct 588 GCCAGCTACGCGCTGCTCACCCACATGATGGCCCAGCAGGCCGGAC-TCGACGTCGGCGA 646 Query 202609 CTTCGTCTGGACAGGTGGTGA 202629 ||||||||||| || || || Sbjct 647 GTTCGTCTGGACCGGCGGCGA 667 >seq6140 Length=1248 Score = 113 bits (124), Expect = 7e-20 Identities = 169/240 (70%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 201847 CGACCGTACCGGTACGGGCACCCTCTCTGTTTTCGGACGCCAGATGCGCTTTAACTTACA 201906 |||||||||||| || ||||| | || |||||||| ||||||||| || | | Sbjct 957 CGACCGTACCGGGACAGGCACACGTTCCGTTTTCGGCTACCAGATGCGATTCGATCTGTC 898 Query 201907 AGAAGGTTTTCCGCTGGTCACCACCAAAAAGGTTCACCTTCGTTCAATCATCCATGAGCT 201966 | |||||||| | || ||||| || | || || || |||||||| ||||| Sbjct 897 GGCGGGTTTTCCTGCCCTGACGACCAAGAAACTGCATCTCAAATCCATCATCCACGAGCT 838 Query 201967 GCTGTGGTTCCTCATGGGTGACACCAACATCCAGTATTTGAAAGACAACAACGTCACCAT 202026 |||||||||||| | || || || |||||| ||| | || || ||| ||| || || Sbjct 837 GCTGTGGTTCCTGAAAGGCGAAACGAACATCGCCTATCTCAAGGAAAACGGCGTGACGAT 778 Query 202027 CTGGGACGAATGGGCGGATAAAAACGGTGACTTAGGCCCGGTGTACGGTAAGCAATGGCG 202086 |||||| |||||||| || | ||||| || | || ||||| || || | || ||||| Sbjct 777 CTGGGATGAATGGGCCGACGAGAACGGCGATCTCGGGCCGGTCTATGGCTATCAGTGGCG 718 >seq3838 Length=2938 Score = 93.3 bits (102), Expect = 7e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 614 GGGGAGTAGTTCAACTGGTAGAGCGTCGGTCTCCAAAACCGAATGTTGCAGGTTCGAGTC 673 |||| |||| |||||||| ||||| ||||||||||||||| | ||||||||||| |||| Sbjct 1705 GGGGCGTAGCTCAACTGGCAGAGCAGCGGTCTCCAAAACCGCAGGTTGCAGGTTCAAGTC 1764 Query 674 CTGTCTCCCCTGCC 687 ||||| |||||||| Sbjct 1765 CTGTCGCCCCTGCC 1778 >seq58 Length=338205 Score = 87.8 bits (96), Expect = 3e-12 Identities = 202/299 (68%), Gaps = 8/299 (3%) Strand=Plus/Minus Query 201790 CATGAAACAATATCTGGACTTACTGCGTGATGTTCGCGAAAACGGGGATGTAAAAGC-CG 201848 |||||| |||||||| || ||||| ||||| || || | || || ||| || Sbjct 80907 CATGAAGCAATATCTCGAACTACTGAACGATGT-CGTGACCAATGGCCTGACCAAGGGCG 80849 Query 201849 ACCGTACCGGTACGGGCACCCTCTCTGTTTTCGGACGCCAGATGCGCTTTAACTTACAAG 201908 |||| ||||| || |||||| | || || | || ||| | || || ||| | Sbjct 80848 ACCGCACCGGCACCGGCACCAAGGCCGTGTTTGCCCGTCAGTTTCGGCATAGCTTGGCCG 80789 Query 201909 AAGGTTTTCCGCTGGTCACCACCAAAAAGGTTCACCTTCGTTCAATCATCC---ATGAGC 201965 | || || |||||| | |||||||| ||| ||||| ||| || |||| |||| Sbjct 80788 ACGGCTTCCCGCTGCTGACCACCAAGAAGCTTCAC-TTCAA--AAGCATCGCCAATGAAT 80732 Query 201966 TGCTGTGGTTCCTCATGGGTGACACCAACATCCAGTATTTGAAAGACAACAACGTCACCA 202025 || | ||| | | | || ||||||||||| ||| |||| || || ||| | Sbjct 80731 TGATCTGGATGTTGAGTGGCAACACCAACATCAAGTGGCTGAACGAAAATGGCGTGCGTA 80672 Query 202026 TCTGGGACGAATGGGCGGATAAAAACGGTGACTTAGGCCCGGTGTACGGTAAGCAATGG 202084 |||||||||||||||| || |||| ||| | |||||||||||||| |||| ||| Sbjct 80671 TCTGGGACGAATGGGCCACCGAAGACGGCGACCTGGGCCCGGTGTACGGCGAGCAGTGG 80613 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 787865250189800