Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_031126.1 Length=244840 Score E Sequences producing significant alignments: (Bits) Value seq7603 113 7e-20 seq6140 93.3 7e-14 >seq7603 Length=749 Score = 113 bits (124), Expect = 7e-20 Identities = 134/179 (75%), Gaps = 2/179 (1%) Strand=Plus/Plus Query 200834 GCGAGCTTTCCTGTCAGCTGTATCAGCGTAGCGCTGATATGTTTTTAGGCGTGCCGTTCA 200893 || |||| ||||| |||||||| ||||| ||||| || ||||| | ||||| ||||||| Sbjct 523 GCAAGCTCTCCTGCCAGCTGTACCAGCGCAGCGCCGACATGTTCCTCGGCGTTCCGTTCA 582 Query 200894 ACATTGCATCATACGCACTACTGATTCACATGGTAGCCCAACAGGTC-AATATGACTGTC 200952 |||| || ||||| || || | |||||| | ||||| |||| | | ||| ||| Sbjct 583 ACATCGCCAGCTACGCGCTGCTCACCCACATGATGGCCCAGCAGGCCGGACTCGAC-GTC 641 Query 200953 GGTGATTTCGTATGGACGGGTGGTGACGTACACATCTACAGCAATCACGAAGAGCAGGT 201011 || || ||||| ||||| || || ||| ||||||||| |||||||| || ||||| Sbjct 642 GGCGAGTTCGTCTGGACCGGCGGCGACTGCCACATCTACGACAATCACGTCGACCAGGT 700 >seq6140 Length=1248 Score = 93.3 bits (102), Expect = 7e-14 Identities = 138/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 200098 GACCGTACCGGTANNNNNACCACGT-CTATTTTCGGTGCACAGATGCGCTTCAATCTACA 200156 ||||||||||| | || |||| | ||||||| |||||||| ||| |||| Sbjct 956 GACCGTACCGGGACAGGCAC-ACGTTCCGTTTTCGGCTACCAGATGCGATTCGATCTGTC 898 Query 200157 AGACGGCTTCCCATTGGTGACGACCAAGAAGTGCCATCTCCGTTCCATCATTCACGAGCT 200216 | || || || ||||||||||||| |||||| |||||||| |||||||| Sbjct 897 GGCGGGTTTTCCTGCCCTGACGACCAAGAAACTGCATCTCAAATCCATCATCCACGAGCT 838 Query 200217 GTTGTGGTTCCTTAACGGTGACACCAATATCAAGTATCTGAACGATAACAATGTCACCAT 200276 | |||||||||| || || || || || ||| ||||| || || ||| || || || Sbjct 837 GCTGTGGTTCCTGAAAGGCGAAACGAACATCGCCTATCTCAAGGAAAACGGCGTGACGAT 778 Query 200277 TTGGGACGAATGGGC 200291 ||||| |||||||| Sbjct 777 CTGGGATGAATGGGC 763 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 783222863040000