Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_031127.1 Length=240761 Score E Sequences producing significant alignments: (Bits) Value seq362 161 2e-34 seq6140 141 1e-28 seq7603 132 7e-26 seq3886 100 4e-16 seq58 95.1 2e-14 >seq362 Length=339261 Score = 161 bits (178), Expect = 2e-34 Identities = 222/308 (72%), Gaps = 2/308 (1%) Strand=Plus/Minus Query 196010 GCTGATGAAACAGTATTTGGAATTGATGCACACCGTGTTGAACGAAGGTCACGAGAAAGC 196069 || ||||||||| || || || || ||||| |||| || || | || || ||||| Sbjct 148650 GCAGATGAAACAATACTTAGATTTAATGCAGCTCGTGCTGGACCAGGGA-ACACAAAAGC 148592 Query 196070 T-GACCGTACCGGCACGGGCACCATCTCTATTTTCGGGTATCAGATGCGTTTTGACCTGC 196128 ||| | || || || ||||||||| |||||| || |||||||| | || |||| | Sbjct 148591 ACGACAGGACGGGAACAGGCACCATCAGTATTTTTGGCCATCAGATGAGGTTCAACCTCC 148532 Query 196129 GCAAAGGGTTCCCGCTGGTCACCACCAAAAAGTTGCACCTGCGATCTATCATCCACGAAC 196188 |||| || || ||||||||||||||||| | || | ||| || |||||||||| Sbjct 148531 AGGAAGGCTTTCCCCTGGTCACCACCAAAAAACTTCATTTAAAATCCATTATCCACGAAC 148472 Query 196189 TGTTGTGGTTCCTGAACGGCGACACCAACATCCAGTATCTGAAAGACAACAACGTCAGTA 196248 || | ||||| | | || |||||||| || || ||||||| ||||| || | | Sbjct 148471 TGATCTGGTTTTTAAGTGGGGACACCAATATTGGCTACCTGAAAGCAAACAATGTAAAGA 148412 Query 196249 TCTGGGATGAGTGGGCAGATGAAGATGGCGATCTTGGCCCCGTCTACGGTAAGCAGTGGC 196308 |||||||||||||||| |||||| | || || || ||||| || || || || |||| Sbjct 148411 TCTGGGATGAGTGGGCTGATGAAAACGGTGACCTGGGCCCTGTTTATGGATCACAATGGC 148352 Query 196309 GTGCATGG 196316 || ||||| Sbjct 148351 GTTCATGG 148344 >seq6140 Length=1248 Score = 141 bits (156), Expect = 1e-28 Identities = 177/240 (74%), Gaps = 2/240 (1%) Strand=Plus/Minus Query 196071 GACCGTACCGGCACGGGCACCATCTCTATTTTCGGGTATCAGATGCGTTTTGACCTG-CG 196129 ||||||||||| || ||||| || ||||||| || |||||||| || || ||| || Sbjct 956 GACCGTACCGGGACAGGCACACGTTCCGTTTTCGGCTACCAGATGCGATTCGATCTGTCG 897 Query 196130 CAAAGGGTTCCCGCTGGTCACCACCAAAAAGTTGCACCTGCGATCTATCATCCACGAACT 196189 | |||| || | || ||||| || |||| || ||| ||||||||||| || Sbjct 896 GCGGGTTTTCCTGCCC-TGACGACCAAGAAACTGCATCTCAAATCCATCATCCACGAGCT 838 Query 196190 GTTGTGGTTCCTGAACGGCGACACCAACATCCAGTATCTGAAAGACAACAACGTCAGTAT 196249 | ||||||||||||| ||||| || |||||| ||||| || || ||| ||| | || Sbjct 837 GCTGTGGTTCCTGAAAGGCGAAACGAACATCGCCTATCTCAAGGAAAACGGCGTGACGAT 778 Query 196250 CTGGGATGAGTGGGCAGATGAAGATGGCGATCTTGGCCCCGTCTACGGTAAGCAGTGGCG 196309 ||||||||| ||||| || || | |||||||| || || ||||| || | |||||||| Sbjct 777 CTGGGATGAATGGGCCGACGAGAACGGCGATCTCGGGCCGGTCTATGGCTATCAGTGGCG 718 Score = 93.3 bits (102), Expect = 7e-14 Identities = 127/176 (72%), Gaps = 6/176 (3%) Strand=Plus/Minus Query 196749 CTGTCCTGTCAGCTTTACCAGCGCAGTGCAGACGTCTTCCTCGGTGTCCCGTTCAACATC 196808 || ||||| ||||| ||||||||| || || |||| ||||| || |||||||| ||| Sbjct 539 CTTTCCTGCCAGCTCTACCAGCGCTCCGCCGATATCTTTCTCGGCGTGCCGTTCAATATC 480 Query 196809 GCTTCGTACGCTCTGTTGGTTCACATGGTGGCACAGCAGGTCAA---TATGGTGGCGGGT 196865 || || || || ||| || | ||||||||| |||||||| | || | ||||| Sbjct 479 GCATCCTATGCCCTGCTGACCCTCATGGTGGC---GCAGGTCACGGGTCTGCAGCCGGGT 423 Query 196866 GATTTCGTCTGGACGGGCGGCGATACCCATCTGTACTCTAACCATCTGGAACAGGC 196921 |||||||| ||| |||||| | ||||| || | |||||| | || ||||| Sbjct 422 GATTTCGTTCACACGCTGGGCGATGCGCATCTCTATGCCAACCATTTCGAGCAGGC 367 >seq7603 Length=749 Score = 132 bits (146), Expect = 7e-26 Identities = 177/246 (72%), Gaps = 0/246 (0%) Strand=Plus/Plus Query 196065 AAAGCTGACCGTACCGGCACGGGCACCATCTCTATTTTCGGGTATCAGATGCGTTTTGAC 196124 ||| | || || ||||| || |||||| | || ||||| | ||||||||||| || Sbjct 105 AAATCCGATCGAACCGGAACCGGCACCCGCAGCATCTTCGGTCACCAGATGCGTTTCGAT 164 Query 196125 CTGCGCAAAGGGTTCCCGCTGGTCACCACCAAAAAGTTGCACCTGCGATCTATCATCCAC 196184 || | | || || ||||| ||||||||||| ||| | ||||| || || || || Sbjct 165 CTTGCCGACGGCTTTCCGCTCGTCACCACCAAGAAGGTCCACCTCAAGTCGATAGTCAAC 224 Query 196185 GAACTGTTGTGGTTCCTGAACGGCGACACCAACATCCAGTATCTGAAAGACAACAACGTC 196244 ||||| ||||||||||| ||||||| ||||| | || ||| | || || |||| Sbjct 225 GAACTCCTGTGGTTCCTGCGCGGCGACTCCAACGTGGCGTGGCTGCACGAGCACGGCGTC 284 Query 196245 AGTATCTGGGATGAGTGGGCAGATGAAGATGGCGATCTTGGCCCCGTCTACGGTAAGCAG 196304 |||||||| |||||||| || || | || || || |||||||||||||| ||| Sbjct 285 TCCATCTGGGACGAGTGGGCCGACGAGAACGGTGAACTCGGCCCCGTCTACGGCGTCCAG 344 Query 196305 TGGCGT 196310 |||||| Sbjct 345 TGGCGT 350 Score = 102 bits (112), Expect = 1e-16 Identities = 142/199 (71%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 196749 CTGTCCTGTCAGCTTTACCAGCGCAGTGCAGACGTCTTCCTCGGTGTCCCGTTCAACATC 196808 || ||||| ||||| ||||||||||| || ||| | |||||||| || |||||||||||| Sbjct 528 CTCTCCTGCCAGCTGTACCAGCGCAGCGCCGACATGTTCCTCGGCGTTCCGTTCAACATC 587 Query 196809 GCTTCGTACGCTCTGTTGGTTCACATGGTGGCACAGCAGGTCAATATGGTGGCGGGTGAT 196868 || ||||| ||| | |||||| |||| ||||||| | | | | || || Sbjct 588 GCCAGCTACGCGCTGCTCACCCACATGATGGCCCAGCAGGCCGGACTCGACGTCGGCGAG 647 Query 196869 TTCGTCTGGACGGGCGGCGATACCCATCTGTACTCTAACCATCTGGAACAGGCCACGTTG 196928 ||||||||||| |||||||| ||| | ||| || || | || |||| || | Sbjct 648 TTCGTCTGGACCGGCGGCGACTGCCACATCTACGACAATCACGTCGACCAGGTGACCGAG 707 Query 196929 CAGCTCTCCCGTGTACCGC 196947 |||||| ||| | ||||| Sbjct 708 CAGCTCGGCCGCGAACCGC 726 >seq3886 Length=850 Score = 100 bits (110), Expect = 4e-16 Identities = 70/80 (88%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 5487 CTCTGTAGTTCAGTTGGTAGAACGGTGGACTGTTAATCCATATGTCGCAGGTTCGAGTCC 5546 |||||||||||||| |||||||||| ||||||||||||| |||||| | ||||||||||| Sbjct 557 CTCTGTAGTTCAGTCGGTAGAACGGCGGACTGTTAATCCGTATGTCACTGGTTCGAGTCC 498 Query 5547 TGCCAGAGTCGCCACATTTT 5566 | ||||| |||| ||||| Sbjct 497 AGTCAGAGGAGCCAAATTTT 478 >seq58 Length=338205 Score = 95.1 bits (104), Expect = 2e-14 Identities = 163/237 (69%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 196071 GACCGTACCGGCACGGGCACCATCTCTATTTTCGGGTATCAGATGCGTTTTGACCTGCGC 196130 ||||| |||||||| ||||||| | | || | |||| | || | | || | Sbjct 80849 GACCGCACCGGCACCGGCACCAAGGCCGTGTTTGCCCGTCAGTTTCGGCATAGCTTGGCC 80790 Query 196131 AAAGGGTTCCCGCTGGTCACCACCAAAAAGTTGCACCTGCGATCTATCATCCACGAACTG 196190 | || ||||||||| | |||||||| ||| | ||| | | ||| | | ||| || Sbjct 80789 GACGGCTTCCCGCTGCTGACCACCAAGAAGCTTCACTTCAAAAGCATCGCCAATGAATTG 80730 Query 196191 TTGTGGTTCCTGAACGGCGACACCAACATCCAGTATCTGAAAGACAACAACGTCAGTATC 196250 | ||| | ||| ||| ||||||||||| ||| ||||| || || ||| ||||| Sbjct 80729 ATCTGGATGTTGAGTGGCAACACCAACATCAAGTGGCTGAACGAAAATGGCGTGCGTATC 80670 Query 196251 TGGGATGAGTGGGCAGATGAAGATGGCGATCTTGGCCCCGTCTACGGTAAGCAGTGG 196307 ||||| || ||||| ||||| ||||| || ||||| || ||||| |||||||| Sbjct 80669 TGGGACGAATGGGCCACCGAAGACGGCGACCTGGGCCCGGTGTACGGCGAGCAGTGG 80613 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 770172348095800