Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_031224.1 Length=59443 Score E Sequences producing significant alignments: (Bits) Value seq7603 159 1e-34 seq362 127 8e-25 >seq7603 Length=749 Score = 159 bits (176), Expect = 1e-34 Identities = 356/529 (67%), Gaps = 4/529 (1%) Strand=Plus/Plus Query 51810 GGCTTCCCGCTCATCACCACCAAGAAGGTGCATTTCCCATCAGTGGTCGGGGAGTTGCTG 51869 ||||| |||||| |||||||||||||||| || || || | ||| || | ||| Sbjct 174 GGCTTTCCGCTCGTCACCACCAAGAAGGTCCACCTCAAGTCGATAGTCAACGAACTCCTG 233 Query 51870 TGGTTGCTTTCGGGCTCTACGAACGTCAACGATCTCCATAAGTACGGCGTCAGCATTTGG 51929 ||||| || ||| | ||||| || || || |||||||| ||| ||| Sbjct 234 TGGTTCCTGCGCGGCGACTCCAACGTGGCGTGGCTGCACGAGCACGGCGTCTCCATCTGG 293 Query 51930 GACGAATGGGCGGATGAAAATGGTAACCTGGGTCCTGTGTATGGTAAGCAGTGGCGTAGT 51989 ||||| ||||| || || || ||| | || || || || || || ||||||||||| Sbjct 294 GACGAGTGGGCCGACGAGAACGGTGAACTCGGCCCCGTCTACGGCGTCCAGTGGCGTAGC 353 Query 51990 TGGGATGCTGGTGGCGGCAAGGTCATCGATCAGATCCATGAAGTC-GTCAAATCAATTAA 52048 ||| | | ||| || |||||| |||||| | | || | ||| | | | Sbjct 354 TGGCCCACCCCTTCGGGCGAGCACATCGACCAGATC-ACGCAGACCGTCGAGACTCTGCG 412 Query 52049 GAACGATCCTGATAGTCGACGGCACATTGTCTCTGCTTGGAATGTGGGTGATTTGGATGA 52108 | | || ||| || ||| ||| || || || ||||| || | || | | Sbjct 413 CTCCAACCCCGATTCGCGGCGGATCATCGTTTCGGCGTGGAACGTCGCCGACATTCCGCA 472 Query 52109 TATGGCGTTGGCTCCCTGCCATACACTATTCCAATTCTATGTAGCTGAAGGTAAGCTTTC 52168 ||||| |||| || ||||| | | ||||| ||||| || || || || ||||| || Sbjct 473 GATGGCCCTGGCGCCGTGCCACGCTTTCTTCCAGTTCTACGTCGCCGACGGCAAGCTCTC 532 Query 52169 GTGCCATTTGTATCAGCGGTCTGCCGACATGTTCTTGGGCGTTCCGTTTAACATTGCCAG 52228 ||||| |||| ||||| |||||||||||| | ||||||||||| ||||| ||||| Sbjct 533 CTGCCAGCTGTACCAGCGCAGCGCCGACATGTTCCTCGGCGTTCCGTTCAACATCGCCAG 592 Query 52229 CTATTCCTTGCTGACGCATCTGATTGCTCGAGCA-GTTGGCCTTGATGTTGGTGAATTCA 52287 ||| | |||| || || |||| || | |||| | || || || || || || ||| Sbjct 593 CTACGCGCTGCTCACCCACATGATGGC-CCAGCAGGCCGGACTCGACGTCGGCGAGTTCG 651 Query 52288 TTTGGACTGGTGGCGACGTCCATATCTACAACAACCATGTAGATCAGGT 52336 | ||||| || |||||| ||| |||||| |||| || || || ||||| Sbjct 652 TCTGGACCGGCGGCGACTGCCACATCTACGACAATCACGTCGACCAGGT 700 >seq362 Length=339261 Score = 127 bits (140), Expect = 8e-25 Identities = 225/324 (69%), Gaps = 8/324 (2%) Strand=Plus/Minus Query 51924 ATTTGGGACGAATGGGCGGATGAAAATGGTAACCTGGGTCCTGTGTATGGTAAGCAGTGG 51983 || ||||| || ||||| |||||||| ||| ||||||| ||||| ||||| || ||| Sbjct 148412 ATCTGGGATGAGTGGGCTGATGAAAACGGTGACCTGGGCCCTGTTTATGGATCACAATGG 148353 Query 51984 CGTAGTTGGG---ATGCTGGTGGCGGCAAGGTCATCGATCAGATC-CATGAAGTCGTCAA 52039 ||| ||| | | | |||||| | ||| || ||||| || || | ||| Sbjct 148352 CGTTCATGGCCAAAACCAGATGGCGGGCA---CATTGACCAGATTACACAAATTATACAA 148296 Query 52040 ATCAATTAAGAACGATCCTGATAGTCGACGGCACATTGTCTCTGCTTGGAATGTGGGTGA 52099 | | || || ||| |||| ||| || || ||||| ||||| |||||||||| || Sbjct 148295 A-CTATAAAAAACAATCCCGATTCCAGAAGGATTATTGTGTCTGCCTGGAATGTGGCAGA 148237 Query 52100 TTTGGATGATATGGCGTTGGCTCCCTGCCATACACTATTCCAATTCTATGTAGCTGAAGG 52159 | || ||||||| | | ||||||||| | | ||||| || ||||||||||| || Sbjct 148236 GATAGAACATATGGCACTTCCACCCTGCCATGCCTTTTTCCAGTTTTATGTAGCTGACGG 148177 Query 52160 TAAGCTTTCGTGCCATTTGTATCAGCGGTCTGCCGACATGTTCTTGGGCGTTCCGTTTAA 52219 || || || || | |||||||| ||| || || || |||| || || ||||| Sbjct 148176 AAAACTGAGCTGTCAGCTTTATCAGCGAAGTGCAGATATTTTTCTGGGGGTACCTTTTAA 148117 Query 52220 CATTGCCAGCTATTCCTTGCTGAC 52243 ||||||| |||| |||| ||||| Sbjct 148116 CATTGCCTCCTATGCCTTACTGAC 148093 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 190064385253050