Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_031230.1 Length=98136 Score E Sequences producing significant alignments: (Bits) Value seq5362 109 3e-19 seq1862 107 1e-18 seq582 96.9 2e-15 >seq5362 Length=3136 Score = 109 bits (120), Expect = 3e-19 Identities = 130/173 (75%), Gaps = 10/173 (6%) Strand=Plus/Minus Query 47028 CGAGGTCCGGCGCATCAACTGCCACCACAACTACACCGAGAACGTCACGATCAAC---GG 47084 ||| ||| ||| ||||||||||||||||||| |||| |||| | | || || || Sbjct 224 CGAAGTCGAGCGGATCAACTGCCACCACAACTTCACCCAGAAGGA---GTTCCACATGGG 168 Query 47085 CGAGAGGGTGTGGCTGACGCGCAAGGGTGCGATCGACGCCAGCGAGGGCAAGTACGGACT 47144 | | | |||||||||| || |||||||||||| | || | |||||||| | ||| || Sbjct 167 CAGGGGTGTGTGGCTGAGCCGTAAGGGTGCGATCAAGGCAAACGAGGGCACGCCCGGGCT 108 Query 47145 CATCCCCGGCTCCATGGGCAC--CAAGTCGTACGTCGTTGTGGGGCAGGGGAA 47195 ||||||||| || ||||| || | ||| |||||||| || ||| |||| || Sbjct 107 CATCCCCGGTTCGATGGGGACGGCGAGT--TACGTCGTCGTCGGGAAGGGAAA 57 >seq1862 Length=5913 Score = 107 bits (118), Expect = 1e-18 Identities = 200/291 (69%), Gaps = 2/291 (1%) Strand=Plus/Plus Query 74563 TTCACTCCGAGTGGGGTTGCGGTAGCCAATTTCACTGTGGTGTCAAATCCCCGGAGATTC 74622 ||||| ||| || | ||||| || || ||||| || | || | ||||| | ||| Sbjct 5246 TTCACCCCGGCGGGTGCCGCGGTTGCAAACTTCACGGTTGCTTCCACGCCCCGTACCTTC 5305 Query 74623 GACAAGCAAACGAATTCCTGGATTGACGAGGAGCCATGGTTCGTACGTTGCAACATCTGG 74682 ||| | | ||| |||| |||| || | |||| | ||||||||||||||| Sbjct 5306 GACCGTAATTCCAATGAATGGAAAGACGGCGATGCGCTGTTCATGCGTTGCAACATCTGG 5365 Query 74683 CGTGACGCGGCCGAGAATGCCGCAGAGTCGCTTGACAAG-GGCACTCGAGTGATCGTCCA 74741 || || || |||||||| | ||| ||| ||||||| | || | ||||| ||||| Sbjct 5366 CGCGAAGCAGCCGAGAACGTCGCGGAG-AGCTTGACCCGTGGTTCACGAGTAATCGTGAG 5424 Query 74742 GGGGCGTCTCAAGTCCCGGTCATATACCACCAACGAAGGCGAGGATCGAACGGTCCTTGA 74801 || || |||||| || || || || ||| ||||| | ||||| ||| | || Sbjct 5425 CGGCCGGCTCAAGCAGCGTTCGTACGAAACTCGCGAGGGCGAAAAGCGAACTGTCGTCGA 5484 Query 74802 GCTCGAGGTCGATGAGATCGGACCCTCGCTGCAGTGGGCCACTGCTAAGGT 74852 |||||| |||||||| ||||| || || ||| ||| ||||| || ||||| Sbjct 5485 GCTCGAAGTCGATGAAATCGGTCCTTCACTGAAGTACGCCACGGCAAAGGT 5535 >seq582 Length=79996 Score = 96.9 bits (106), Expect = 2e-15 Identities = 113/153 (74%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 46297 ATCGCCAGTCTGCCATTCATCTACCCCCACGTTGCGCTGATGCCAGATGCTCACGCAGGC 46356 |||||||| ||||| || | || || ||||| | | ||||| || | || || ||| Sbjct 74537 ATCGCCAGCCTGCCCATCGTTTATCCGCACGTGGTGGCCATGCCCGACGTGCATGCCGGC 74596 Query 46357 AAGGGGTCTGCCGTGGGCACGGTGATCCCCACCAAGGACGCCGTCATCCCAGCGGCCGTG 46416 | || | |||| |||| ||||| ||||| | |||||||||||| || |||||| Sbjct 74597 ATCGGCGCCACCGTCGGCAGCGTGATTCCCACGCGCGGCGCCGTCATCCCGGCCGCCGTG 74656 Query 46417 GGTGTCGACATCGGTTGCGGGATGATCGGCGTG 46449 || ||||||||||| ||||| |||| || |||| Sbjct 74657 GGCGTCGACATCGGCTGCGGCATGAACGCCGTG 74689 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 313856819909085