Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_031252.1 Length=51290 Score E Sequences producing significant alignments: (Bits) Value seq1862 141 3e-29 >seq1862 Length=5913 Score = 141 bits (156), Expect = 3e-29 Identities = 243/344 (71%), Gaps = 9/344 (3%) Strand=Plus/Plus Query 30889 GAGGAAATA-ATGGCCGGTGAAACAACGATCACAGTGATCGGAAACCTGACGAACGATCC 30947 |||||| | ||||| || || || | ||||| || ||||||||||||||| ||||| Sbjct 5176 GAGGAACCACATGGCTGGCGACACCATCATCACCGTCATCGGAAACCTGACGGCTGATCC 5235 Query 30948 AGAGCTACGGTTCACGCCGTCTGGCAGCGCTGTCGCGAACTTCACGATCGCGAGCACACC 31007 || || || ||||| ||| | || ||| || || ||||||||| | || ||| || Sbjct 5236 TGAACTTCGTTTCACCCCGGCGGGTGCCGCGGTTGCAAACTTCACGGTTGCTTCCACGCC 5295 Query 31008 GCGAACGTTCGATCGACAGTCAAACGAGTGGAAAGACGGCGAGACGCTCTTCCTGCG-CG 31066 || || ||||| || | || || || |||||||||||||| |||| ||| |||| | Sbjct 5296 CCGTACCTTCGACCGTAATTCCAATGAATGGAAAGACGGCGATGCGCTGTTCATGCGTTG 5355 Query 31067 CTGCTGTCTGGCGCGAGACTGCAGAGAATGTCGCAGAGTCCCTG--CAGAAGGGCATGGA 31124 | | |||||||||| | || ||||| ||||| ||| | || | | | || | Sbjct 5356 CAAC-ATCTGGCGCGAAGCAGCCGAGAACGTCGCGGAGAGCTTGACCCGTGGTTCACG-- 5412 Query 31125 GGTCATC-TGCGTCGGGCGTCTGAAGTCGCGCAGCTACGAGACGAAAGAGGGCGAGAAGC 31183 || ||| || | ||| || || ||| ||| ||||| || |||||||| |||| Sbjct 5413 AGTAATCGTGAG-CGGCCGGCTCAAGCAGCGTTCGTACGAAACTCGCGAGGGCGAAAAGC 5471 Query 31184 GCACTGTCATCGAGCTCGAAGTCGACAGCATCGGCCCGTCGCTG 31227 | |||||| |||||||||||||||| ||||| || || ||| Sbjct 5472 GAACTGTCGTCGAGCTCGAAGTCGATGAAATCGGTCCTTCACTG 5515 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 163979124198120