Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq48 147 5e-30 seq420 136 9e-27 seq593 120 7e-22 seq1623 109 1e-18 seq456 105 2e-17 seq79 95.1 3e-14 >seq48 Length=44992 Score = 147 bits (162), Expect = 5e-30 Identities = 164/219 (75%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | ||| || | ||||||||||||||| ||||| |||||||| |||| || || | Sbjct 22622 GAGACGGAGAACCAAATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCGGACAATGTGCG 22563 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 ||||| || || || ||||| ||||| || || || || || | | ||||||||| Sbjct 22562 ACCATCCTCGAGCTGCTTGCCGGCAAAGATGAGTCTTTGTTGATCGGGTGGGATTCCTTC 22503 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 ||| ||||| || || |||||| | || | | ||||||| | ||| ||||| | || Sbjct 22502 CTTGTCTTGGATCTTGGTCTTGACATTATCGATGGTGTCTGAGCCCTCGACTTCCAAGGT 22443 Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| ||||| ||||||||||| ||||| | |||||| Sbjct 22442 GATAGTCTTGCCAGTGAGAGTCTTGACGAAAATCTGCAT 22404 Score = 122 bits (134), Expect = 2e-22 Identities = 159/220 (72%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | ||| || | |||||||||||||| ||||| |||||||| || | | || | Sbjct 22850 GAGACGGAGTACCAAGTGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGAGAGGGTGCG 22791 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 ||||| || || || || ||||| || || | || || || | | ||||||||| Sbjct 22790 GCCATCCTCGAGCTGCTTGCCAGCGAAAATGAGACGTTGTTGATCGGGTGGGATTCCTTC 22731 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 ||| |||||||| || ||||| | || | | | || || | ||| || || | ||| Sbjct 22730 CTTGTCTTGAATCTTGGTCTTGACGTTGTCGATGGTATCAGATCCCTCAACCTCCAAAGT 22671 Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 |||||| ||||| ||||||||||| ||||| | ||||||| Sbjct 22670 AATAGTCTTGCCAGTGAGAGTCTTTACGAAAATCTGCATT 22631 Score = 107 bits (118), Expect = 4e-18 Identities = 155/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | ||| || | |||||||||||||| ||||| |||||||| |||| || ||| | Sbjct 22166 GAGACGGAGTACCAAGTGAAGAGTAGACTCCTTTTGTATGTTGTAGTCGGATAGAGTGCG 22107 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 ||||| || || || || ||||| || || | || || || | | ||||||||| Sbjct 22106 GCCATCCTCGAGTTGCTTGCCAGCGAAAATGAGACGTTGTTGATCGGGTGGGATTCCTTC 22047 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 ||| ||||| || || ||||| | || | | | || || | ||| || ||||| || Sbjct 22046 CTTGTCTTGGATCTTGGTCTTGACGTTGTCGATGGTATCAGATCCCTCGACCTCAAGTGT 21987 Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || ||||| || | ||||| ||||| | ||||| Sbjct 21986 GATGGTCTTGCCAGTCAATGTCTTTACGAAAATTTGCAT 21948 Score = 98.7 bits (108), Expect = 2e-15 Identities = 156/222 (70%), Gaps = 4/222 (2%) Strand=Plus/Minus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | ||| || | |||||||||||||| ||||| ||||| || |||| || ||| | Sbjct 22394 GAGACGGAGTACCAAGTGAAGAGTAGACTCCTTTTGAATGTTATAGTCGGATAGAGTGCG 22335 Query 151946 CCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 || || || || ||||| ||||| ||||| || | ||||| || | | || || Sbjct 22334 GCCGTCCTCGAGTTGCTTT--CCGGCAAAGATGAGACGTTGCTGATCGGGTGGAATGCCC 22277 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 ||||| |||||||| || || ||| | || | | | || || | ||| || || || Sbjct 22276 TCCTTGTCTTGAATCTTGGTCTTTACATTGTCGATGGTATCAGATCCCTCGACCTCCAGT 22217 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || || || || || || | ||||| || |||| ||||||| Sbjct 22216 GTGATGGTCTTTCCAGTCAATGTCTTGACAAAGATCTGCATT 22175 >seq420 Length=40905 Score = 136 bits (150), Expect = 9e-27 Identities = 162/220 (74%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | ||| || | ||||||||||||||||||||| |||||||| || | | || | Sbjct 13327 GAGACGGAGAACCAAATGAAGAGTAGACTCTTTTTGTATGTTGTAGTCAGAGAGGGTGCG 13386 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 ||||| || || || || || ||||| || | |||||||| | | ||||||||| Sbjct 13387 GCCATCCTCAAGTTGCTTGCCAGCAAAGATTAGTCGTTGCTGGTCGGGTGGGATTCCTTC 13446 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 ||| ||||| || || |||||| | || | | ||||||| | ||| || || | || Sbjct 13447 CTTGTCTTGGATCTTGGTCTTGACATTGTCGATGGTGTCTGATCCCTCAACCTCCAAGGT 13506 Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 ||| || || || ||||||||||| ||||| | ||||||| Sbjct 13507 AATGGTCTTTCCAGTGAGAGTCTTGACGAAAATCTGCATT 13546 Score = 118 bits (130), Expect = 2e-21 Identities = 158/220 (72%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | ||| || | |||||||||||||||||||| |||||||| || | | || | Sbjct 13555 GAGACGGAGTACCAAGTGAAGAGTAGACTCTTTTTGTATGTTGTAGTCAGAGAGGGTGCG 13614 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 ||||| || || || ||||| |||||||| | || || || | | || || || Sbjct 13615 GCCATCCTCGAGTTGCTTGCCGGCAAAGATAAGGCGTTGTTGATCGGGTGGAATACCCTC 13674 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 ||| |||||||| || ||||| | || | | | || || | ||| || || | || Sbjct 13675 CTTATCTTGAATCTTGGTCTTGACGTTGTCGATGGTATCAGATCCCTCAACCTCCAAGGT 13734 Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 |||||| ||||| ||||||||||| ||||| | ||||||| Sbjct 13735 AATAGTCTTGCCAGTGAGAGTCTTGACGAAAATCTGCATT 13774 Score = 113 bits (124), Expect = 1e-19 Identities = 157/220 (71%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | ||| || | |||||||| ||||| ||||| |||||||| |||| || ||| | Sbjct 13783 GAGACGGAGAACCAAGTGAAGAGTGGACTCCTTTTGAATGTTGTAGTCGGATAGAGTGCG 13842 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 ||||| || || || ||||| ||||| || | || || || | | ||||||||| Sbjct 13843 ACCATCCTCGAGTTGCTTGCCGGCAAAGATGAGACGTTGTTGATCGGGTGGGATTCCTTC 13902 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 ||| ||||| || || || ||| | || | | ||||||| | || || || || || Sbjct 13903 CTTGTCTTGGATCTTGGTCTTTACATTGTCGATGGTGTCTGATCCTTCGACCTCCAGTGT 13962 Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || || || || || | |||||| ||||| | ||||||| Sbjct 13963 GATGGTCTTTCCAGTCAAAGTCTTGACGAAAATCTGCATT 14002 Score = 111 bits (122), Expect = 4e-19 Identities = 159/222 (72%), Gaps = 4/222 (2%) Strand=Plus/Plus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | ||| || | |||||||| ||||| ||||| |||||||| |||| | || | Sbjct 14011 GAGACGGAGTACCAAGTGAAGAGTGGACTCCTTTTGAATGTTGTAGTCGGAAAGGGTACG 14070 Query 151946 CCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 || || ||||| ||||| || || ||||| || || || || || | | ||||||| Sbjct 14071 TCCGTCCTCTAGTTGCTTT--CCAGCAAAGATGAGTCTTTGTTGATCGGGTGGGATTCCT 14128 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 ||||| ||||| || || ||||| | || | | ||||||| | ||| || ||||| Sbjct 14129 TCCTTGTCTTGGATCTTGGTCTTGACGTTGTCGATGGTGTCTGAGCCCTCGACCTCAAGT 14188 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || || || ||||| || | ||||| || |||| |||||| Sbjct 14189 GTGATGGTCTTGCCAGTCAATGTCTTGACAAAGATTTGCATT 14230 >seq593 Length=58250 Score = 120 bits (132), Expect = 7e-22 Identities = 156/214 (73%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || | ||| |||||||| || ||||| |||||||| |||| | || | ||||| Sbjct 29588 AGAACCAAATGGAGAGTAGATTCCTTTTGAATGTTGTAGTCGGAGAGGGTGCGGCCATCC 29529 Query 151953 TCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010 || || ||||| |||||||| || || || || || || | | ||||||||||| | Sbjct 29528 TCGAGTTGCTTT--CCGGCGAAAATGAGTCTTTGTTGATCGGGTGGAATTCCTTCCTTGT 29471 Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAG 152070 ||||||| || || ||| | || | | |||| || | ||| ||||| | |||||||| Sbjct 29470 CTTGAATCTTGGTCTTAACATTGTCGATGGTGTCAGATCCCTCGACTTCCAAAGTAATAG 29411 Query 152071 TTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | ||||| ||||| ||||| || || | ||||| Sbjct 29410 TCTTGCCAGTGAGGGTCTTTACAAATATTTGCAT 29377 Score = 104 bits (114), Expect = 5e-17 Identities = 151/210 (72%), Gaps = 5/210 (2%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| ||||||||||| || ||||| |||||||| || | | || | ||||| || | Sbjct 29355 CAAG-TGAAGAGTAGATTCCTTTTGAATGTTGTAGTCAGAGAGGGTGCGGCCATCCTCGA 29297 Query 151957 G--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTG 152014 | ||||| ||||| ||||| || | || || || | | |||||||||||| ||||| Sbjct 29296 GTTGCTTT--CCGGCAAAGATGAGACGTTGTTGATCGGGTGGGATTCCTTCCTTGTCTTG 29239 Query 152015 AATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTT 152074 ||| || |||||| | || | | |||| || | ||| ||||| || || || || || Sbjct 29238 AATCTTGGTCTTGACATTGTCGATGGTGTCAGATCCCTCAACTTCCAGGGTGATGGTCTT 29179 Query 152075 GCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || | ||||| || |||| ||||| Sbjct 29178 TCCAGTCAAGGTCTTTACAAAGATTTGCAT 29149 Score = 95.1 bits (104), Expect = 3e-14 Identities = 151/215 (70%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 ||| || | ||||||||||||||| ||||| |||||||| || | | || | ||||| Sbjct 29133 GAGTACCAAATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGAGAGGGTGCGGCCATC 29074 Query 151952 TTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTT 152009 || || ||||| ||||| ||||| || | || || || | | ||||||||||| Sbjct 29073 CTCGAGTTGCTTT--CCGGCAAAGATGAGACGTTGTTGATCGGGTGGAATTCCTTCCTTG 29016 Query 152010 TCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATA 152069 ||||| || || || || | || | | |||| || | ||| || || | || || Sbjct 29015 TCTTGGATCTTGGTCTTTACGTTATCGATGGTGTCAGATCCCTCAACCTCCAAGGTGATG 28956 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || |||||||| || |||| ||||| Sbjct 28955 GTCTTACCAGTAAGAGTCTTTACAAAGATTTGCAT 28921 >seq1623 Length=5066 Score = 109 bits (120), Expect = 1e-18 Identities = 158/221 (71%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | ||| || | ||||||||||||||| |||||||||||||| |||| | ||| | Sbjct 110 GAGACGGAGAACCAAATGAAGAGTAGACTCCTTTTGGATGTTGTAGTCGGAAAGAGTACG 169 Query 151946 CCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 ||||| || || ||||| ||||| |||||||| | || || || | | ||||||| Sbjct 170 ACCATCCTCAAGTTGCTTT--CCGGCAAAGATAAGACGTTGTTGATCGGGGGGGATTCCT 227 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 ||||| ||||| || || || || |||| | | | || || | ||| || || | Sbjct 228 TCCTTGTCTTGGATCTTGGTCTTTACGTTCTCGATGGTATCAGAGCCCTCAACCTCCAAG 287 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || || || || || || || |||| ||||| Sbjct 288 GTGATGGTCTTACCAGTCAGGGTTTTAACAAAGATTTGCAT 328 >seq456 Length=67341 Score = 105 bits (116), Expect = 2e-17 Identities = 153/213 (72%), Gaps = 5/213 (2%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || ||||||||||| ||||||||||||||||| | | || | || || || | Sbjct 21376 CAAG-TGGAGAGTAGACTCCTTTTGGATGTTGTAATCCGAAAGGGTACGACCGTCCTCCA 21434 Query 151957 --GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTG 152014 ||||| ||||| ||||| | | ||||| || | | |||||| ||||| ||||| Sbjct 21435 ATTGCTTT--CCGGCAAAGATCAAACGTTGCTGATCGGGGGGGATTCCCTCCTTGTCTTG 21492 Query 152015 AATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTT 152074 || || |||||| |||| | | |||| || | ||| || || || || || || || Sbjct 21493 GATCTTGGCCTTGACATTCTCAATGGTGTCAGATCCCTCAACCTCGAGGGTGATGGTCTT 21552 Query 152075 GCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || || | |||||| || |||| |||||| || Sbjct 21553 TCCTGTTAAAGTCTTAACAAAGATCTGCATGTT 21585 >seq79 Length=127859 Score = 95.1 bits (104), Expect = 3e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | |||||| | || ||||||||||| ||||||||||||||||| | | || | Sbjct 118840 GAGACGGAGGACCAAGTGGAGAGTAGACTCCTTTTGGATGTTGTAATCCGAAAGGGTGCG 118781 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 ||||| || | || ||||||||||| | | ||||| || | | |||||| || Sbjct 118780 GCCATCCTCCAATTGCTTGCCGGCGAAGATCAAACGTTGCTGATCGGGGGGGATTCCCTC 118721 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 ||| ||||| || || ||||| |||| | | | || || | |||||| || || || Sbjct 118720 CTTGTCTTGGATCTTAGCCTTGACGTTCTCGATGGTATCGGATCCCTCTACCTCGAGGGT 118661 Query 152066 AATAGTTTTGCC 152077 ||| || || || Sbjct 118660 AATGGTCTTACC 118649 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153613759477355