Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_031924.1 Length=47564 Score E Sequences producing significant alignments: (Bits) Value seq400 168 2e-37 seq1320 102 2e-17 seq833 98.7 3e-16 seq45 84.2 7e-12 >seq400 Length=38681 Score = 168 bits (186), Expect = 2e-37 Identities = 205/277 (74%), Gaps = 2/277 (1%) Strand=Plus/Plus Query 9192 GACGCACAGCAAAGGATTGATGCTGCGCGCAATGATGCCGTTAATGCTGCTGCTAAGTCT 9251 || || ||||| ||||| || |||||||||||||| || ||||||| ||| || Sbjct 33305 GAAGCGCAGCAGAGGATCGACCAGGCGCGCAATGATGCTCTTGATGCTGCCGCTCGCGCT 33364 Query 9252 GGCAGGTTGCAGCAACAACTCGCAAATATCCGCAAGCAGCTT-GTCGGATATTCCACCTC 9310 ||| ||||||||||||| |||| ||||| ||||||| | | | ||| | || | Sbjct 33365 GGCCGGTTGCAGCAACAGCTCGTTGCCATCCGTGAGCAGCTCAGGCAG-TATAACGCCAC 33423 Query 9311 TGAGTCCATTGGCAACCCAGCCGCAGATGCCGGAGTTTTGCTTGGAGACGTGCTCAGCAA 9370 | || ||| |||||||||| ||||||||||||||| |||||||||||||| Sbjct 33424 TATCGGCACTGGGGCGTCAGCCGCAGACACCGGAGTTTTGCTTGCCGACGTGCTCAGCAA 33483 Query 9371 ATCTGTCGAAAGAAATAGACAACTGGCAGATTACGCTGACAGGGCAAGAGAAGCAGGACT 9430 |||| |||| |||| ||||||||||||| ||||||||| |||| ||||| |||| Sbjct 33484 ATCTCTCGAGCGAAACCGACAACTGGCAGAGTACGCTGACCGGGCCGCCGAAGCCGGACG 33543 Query 9431 AGCGTGCCAGAAGCAATACGAATCACTGACAAGGAGA 9467 || || | ||||| ||||| || |||||| || || Sbjct 33544 AGTCTGTGAAAAGCAGTACGATTCGCTGACACGGTGA 33580 >seq1320 Length=7270 Score = 102 bits (112), Expect = 2e-17 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 36526 TACGAGTACGAAGCTGGCCTTCGATGTAAACCTGCGAACCTTTTCGAAGGTATTCTCCTG 36585 |||| || |||||||| ||||||||||| ||||||| || || || || ||||| || | Sbjct 6234 TACGGGTGCGAAGCTGACCTTCGATGTAGACCTGCGCGCCCTTGCGCAGATATTCGCCAG 6175 Query 36586 CAACTTCCGCAAGTTTCCCGAATATGACAATACGATGCCACTCTGTCTGTTCTTTCTTTT 36645 | |||||||| || || ||||| | || | |||||||| |||||||| || | | | Sbjct 6174 CCACTTCCGCGAGCTTGCCGAACAGCACCACGCGATGCCATTCTGTCTGCTCCCGCATCT 6115 Query 36646 CTCCTGTCTGCTTATC 36661 | |||||||| || || Sbjct 6114 CCCCTGTCTGTTTGTC 6099 >seq833 Length=8904 Score = 98.7 bits (108), Expect = 3e-16 Identities = 171/246 (70%), Gaps = 6/246 (2%) Strand=Plus/Minus Query 36439 TACCACCAAGCATCTGCATCACGCCGCCCATCTGCGGAATGACAATCTCTGTGGTGTATC 36498 ||||||| || | |||||| ||| ||| | || | || ||| || |||||||| | Sbjct 8578 TACCACCCAGGAGCTGCATTCTGCCCTGCATGT-CG--ACGATAATTTCGGTGGTGTACC 8522 Query 36499 TGTCTATTCCGTTGCTGTCAGTCCATTTACGAGTACGAAGCTGGCCTTCGATGTAAACCT 36558 | || |||| | || ||| | || || |||||| ||||||||||| |||| Sbjct 8521 GTTTGATACCGTCTTTTTC---CCACTCTCGTGTTTGAAGCTTACCTTCGATGTATACCT 8465 Query 36559 GCGAACCTTTTCGAAGGTATTCTCCTGCAACTTCCGCAAGTTTCCCGAATATGACAATAC 36618 |||| ||||| || || || || || || | ||| || | |||||| || | || || Sbjct 8464 GCGATCCTTTCCGCAGATACTCACCAGCGATTTCAGCGACTTTCCCAAACAAAGAAACAC 8405 Query 36619 GATGCCACTCTGTCTGTTCTTTCTTTTCTCCTGTCTGCTTATCTTTCCACTGCTCAGATG 36678 | ||||| || |||| ||| || | ||| || ||||| || ||||||||||| || Sbjct 8404 GGTGCCATTCGGTCTTTTCGACTTTCTGTCCCGTTTGCTTGTCAGTCCACTGCTCACTTG 8345 Query 36679 TTGCAA 36684 |||||| Sbjct 8344 TTGCAA 8339 >seq45 Length=185997 Score = 84.2 bits (92), Expect = 7e-12 Identities = 103/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 36537 AGCTGGCCTTCGATGTAAACCTGCGAACCTTTTCGAAGGTATTCTCCTGCAACTTCCGCA 36596 |||| |||||||||||| |||||||||||||| || |||||||| || || | || ||| Sbjct 40280 AGCTTGCCTTCGATGTAGACCTGCGAACCTTTGCGCAGGTATTCACCGGCGATCTCTGCA 40221 Query 36597 AGTTTCCCGAATAT-GACAATACGATGCCACTCTGTCTGTTCTTTCTTTTCTCCTGTCTG 36655 | || ||||| || ||| | ||| ||||| || || | || ||| | || || || Sbjct 40220 ACCTTGCCGAACATCGAC-ACACGGTGCCATTCGGTTTTCTCGACCTTCTGGCCGGTTTG 40162 Query 36656 CTTATCTTTCCACTGCTC 36673 ||| || ||||||| || Sbjct 40161 CTTGTCGGTCCACTGTTC 40144 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 152057907138060