Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_031935.1 Length=186386 Score E Sequences producing significant alignments: (Bits) Value seq1400 91.5 2e-13 seq528 87.8 2e-12 seq4094 82.4 9e-11 >seq1400 Length=5517 Score = 91.5 bits (100), Expect = 2e-13 Identities = 66/75 (88%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 17858 AGGGGAATTAGCTCAGTTGG-TAGAGCGCCTGCTTTGCAAGCAGGATGTCAGCGGTTCGA 17916 ||||| |||||||||| ||| |||||||||||| ||||| |||||| |||| |||||||| Sbjct 2101 AGGGGGATTAGCTCAGCTGGCTAGAGCGCCTGCCTTGCACGCAGGAGGTCAACGGTTCGA 2160 Query 17917 GTCCGCTATTCTCCA 17931 |||| ||||||||| Sbjct 2161 CTCCGTTATTCTCCA 2175 >seq528 Length=126797 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/75 (87%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 17858 AGGGGAATTAGCTCAGTTGG-TAGAGCGCCTGCTTTGCAAGCAGGATGTCAGCGGTTCGA 17916 ||||| |||||||||| ||| |||||||| ||| | ||| ||| || ||||||||||||| Sbjct 34749 AGGGGGATTAGCTCAGCTGGCTAGAGCGCTTGCCTGGCAGGCAAGAGGTCAGCGGTTCGA 34690 Query 17917 GTCCGCTATTCTCCA 17931 |||||||||||||| Sbjct 34689 CTCCGCTATTCTCCA 34675 >seq4094 Length=1744 Score = 82.4 bits (90), Expect = 9e-11 Identities = 58/65 (89%), Gaps = 1/65 (2%) Strand=Plus/Plus Query 157504 TGGCGGAATTGGTAGACGCGCTGGGTTTAGGTTCCAGTGTCCTTGCGACGTGGAGGTTCA 157563 |||||||||||| ||||||||||| ||||||||||||||| || ||||||| |||||| Sbjct 1550 TGGCGGAATTGGCAGACGCGCTGGATTTAGGTTCCAGTGT-CTCAGGACGTGGGGGTTCA 1608 Query 157564 AGTCC 157568 ||||| Sbjct 1609 AGTCC 1613 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596202808970800