Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_031946.1 Length=40443 Score E Sequences producing significant alignments: (Bits) Value seq816 100 7e-17 seq1130 87.8 5e-13 seq2164 86.0 2e-12 seq833 86.0 2e-12 seq1321 82.4 2e-11 >seq816 Length=14434 Score = 100 bits (110), Expect = 7e-17 Identities = 69/78 (88%), Gaps = 4/78 (5%) Strand=Plus/Minus Query 24245 CTCCATAAAACAAAACCCGCCGTAGCGAGTTCAGATAAAAGAAATCCCCGCGAGTACGAG 24304 ||||||||||||||||||||||||||||||||||||||||||||||| || ||| |||| Sbjct 11250 CTCCATAAAACAAAACCCGCCGTAGCGAGTTCAGATAAAAGAAATCCTCGTCAGTGCGAG 11191 Query 24305 GATG----TTATTGCTGC 24318 |||| | |||||||| Sbjct 11190 GATGCTGTTCATTGCTGC 11173 >seq1130 Length=54118 Score = 87.8 bits (96), Expect = 5e-13 Identities = 87/110 (79%), Gaps = 7/110 (6%) Strand=Plus/Plus Query 2661 TTTGAAGAGTTCCGCCTCTATCATCGCGACGAGAACGGCAAGATCGTCAAGACCAACGAT 2720 ||||||||||||||| | ||||| ||| | || ||||||||| ||||| ||||| Sbjct 37687 TTTGAAGAGTTCCGCATGTATCACCGCAAGGA---CGGCAAGATTATCAAGCTGGACGAT 37743 Query 2721 GA--TGTGCTCGATGCTACTCGCTACGGCTACATGATGCGCCGCTTCGCC 2768 || ||| ||| || || ||||||| |||||||||||||||||||||| Sbjct 37744 GACTTGTTGTCG--GCCACACGCTACGCCTACATGATGCGCCGCTTCGCC 37791 >seq2164 Length=1578 Score = 86.0 bits (94), Expect = 2e-12 Identities = 50/52 (96%), Gaps = 0/52 (0%) Strand=Plus/Plus Query 22437 ATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCAGTTAAA 22488 |||||||||||||||||||||||||||||||||||||||||||||| || || Sbjct 209 ATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTTCAA 260 >seq833 Length=8904 Score = 86.0 bits (94), Expect = 2e-12 Identities = 164/238 (69%), Gaps = 3/238 (1%) Strand=Plus/Minus Query 26734 TTGCCTTCAAGATAAACCTCAGAACCTTTTCGCAGATACTCGCTGGCAATTTCTGCCAGT 26793 || ||||| | || |||| || ||||| ||||||||||| | || ||||| || | | Sbjct 8483 TTACCTTCGATGTATACCTGCGATCCTTTCCGCAGATACTCACCAGCGATTTCAGCGACT 8424 Query 26794 TTCCCGCTCATTACCACACGGTGCCACTCCGTCTGCTCCTTTTGCTCTCCAGTTTGCTTA 26853 ||||| || ||||||||||| || |||| || || || ||| |||||||| Sbjct 8423 TTCCCAAACAAAGAAACACGGTGCCATTCGGTCTTTTCGACTTTCTGTCCCGTTTGCTTG 8364 Query 26854 TCACGCCATTGTTCTGACGTAGCAACTGTAAGGTTTGCAAATGCCGTTCCTGATGGGTGA 26913 ||| ||| || || || |||| | || || | | || | || | | | ||| | Sbjct 8363 TCAGTCCACTGCTCACTTGTTGCAAGGCTGAGATTGGTTACTG-CATTACCGTTCGGTAA 8305 Query 26914 ATATCTGATTTCTGGATCATGCCCA-AGGCGACCAATAATGATCACCTTATTTACGCC 26970 || | |||||||||| || ||| ||| | |||| | |||||| ||||||||||| Sbjct 8304 GTAGCGAGTTTCTGGATCTTGACCACAGGTG-CCAACCAAGATCACTTTATTTACGCC 8248 >seq1321 Length=3862 Score = 82.4 bits (90), Expect = 2e-11 Identities = 143/207 (69%), Gaps = 1/207 (0%) Strand=Plus/Minus Query 26758 CCTTTTCGCAGATACTCGCTGGCAATTTCTGCCAGTTTCCCGCTCATTACCACACGGTGC 26817 || || |||||||| || | || | ||| || || || ||| || ||||| |||||| Sbjct 2812 CCCTTGCGCAGATATTCACCAGCCACTTCCGCGAGCTTGCCGAACAGCACCACGCGGTGC 2753 Query 26818 CACTCCGTCTGCTCCTTTTGCTCTCCAGTTTGCTTATCACGCCATTGTTCTGACGTAGCA 26877 || |||||||||||| ||| || || || || |||||||| |||||| || || Sbjct 2752 CATTCCGTCTGCTCCCGCATCTCCCCCGTCTGTTTGTCACGCCAGCTTTCTGATGTGGCC 2693 Query 26878 ACTGTAAGGTTTGCAAATGCCGTTCCTGATGGGTGAATATCTGATTTCTGGATCATGCCC 26937 || |||||||| | || || || | |||| || | || ||| ||||||| || Sbjct 2692 ACCTGCAGGTTTGCCACTG-CGCCCCCGTTGGGGATGTAACGGACTTCCGGATCATTGCC 2634 Query 26938 AAGGCGACCAATAATGATCACCTTATT 26964 || || || | | ||| ||||| || Sbjct 2633 CAGACGCCCGACGAGGATGACCTTGTT 2607 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 129274496863050