Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq5291 194 2e-44 seq6687 118 1e-21 seq98 114 1e-20 seq531 111 2e-19 seq689 98.7 1e-15 >seq5291 Length=399 Score = 194 bits (214), Expect = 2e-44 Identities = 139/159 (87%), Gaps = 1/159 (1%) Strand=Plus/Plus Query 8351 CTGTTGCCCAGGCTGGAGTGCAGTGGCCTGATCTCCGCTCACTGCAACCTCCGCCTCCCG 8410 |||||||||||||||||||||| |||| || |||| |||||| ||||||| |||||||| Sbjct 242 CTGTTGCCCAGGCTGGAGTGCAATGGCATGTTCTCGGCTCACCACAACCTCTGCCTCCCG 301 Query 8411 GGTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAGGCAAAAGCCAC 8470 ||||||||| ||||||||||||| |||||| |||||||||| |||||||||| ||||| Sbjct 302 GGTTCAAGCGATTCTCCTGCCTCGGCCTCCTGAGTAGCTGGAATTACAGGCACGTGCCAC 361 Query 8471 CACGCCAAGCTAATTTTTGTATTTTTAGTAGAGAGAGGG 8509 ||| || ||||||||||| |||||| ||||||| |||| Sbjct 362 CACACCCGGCTAATTTTTGCATTTTT-GTAGAGACAGGG 399 >seq6687 Length=488 Score = 118 bits (130), Expect = 1e-21 Identities = 98/119 (82%), Gaps = 2/119 (2%) Strand=Plus/Plus Query 8486 TTTGTATTTTTAGTAGAGAGAGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTG 8545 |||| ||||||||||| || || ||||||| | ||||||||| |||||| || ||| | Sbjct 326 TTTGGATTTTTAGTAGTGACAGCGTTTCACTGTATTGGCCAGGATGGTCTTGATCTCTTC 385 Query 8546 ACCTCATGTGATCCACCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCA 8604 |||| |||||||| | ||||| ||||||| || |||||||||||||||| ||||||| Sbjct 386 ACCT--TGTGATCCCCTTGCCTTGGCCTCCAAATTTGCTGGGATTACAGGCCTGAGCCA 442 Score = 100 bits (110), Expect = 3e-16 Identities = 87/108 (81%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 8351 CTGTTGCCCAGGCTGGAGTGCAGTGGCCTGATCTCCGCTCACTGCAACCTCCGCCTCCCG 8410 ||||||| |||| ||| || || |||| |||| |||||||||||| || ||||| || Sbjct 128 CTGTTGCACAGGGTGGGGTACAATGGCGCCATCTTTGCTCACTGCAACTTCTGCCTCACG 187 Query 8411 GGTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACA 8458 ||| ||||| ||| |||| ||||||||||| |||||||||| |||| Sbjct 188 GGTCCAAGCGATTGTCCTCCCTCAGCCTCCCAGGTAGCTGGGACTACA 235 >seq98 Length=772300 Score = 114 bits (126), Expect = 1e-20 Identities = 528/832 (63%), Gaps = 12/832 (1%) Strand=Plus/Plus Query 23208 AACACCCA--TTTTTTGATATTCCCCAACACGTCTTTCGAAAAAATTTGTCTTACCCTCT 23265 ||||||| |||||||||| || || |||||| | || || ||||| || || || | Sbjct 410090 AACACCCCGCTTTTTTGATAATCACCCACACGTTTCTCAAAGAAATTGGTTTTGCCTTGC 410149 Query 23266 AATGATATATTTTCCATAAAATCAAATGGATTAGAAGTATTATATACAGCTTTACATGAT 23325 | || || | |||||||||||||| ||||| | | || ||||| || | Sbjct 410150 AGGGAGATCATCTCCATAAAATCAAACGGATTGGTGGCATGATATATTTTGGTATAACCC 410209 Query 23326 AATTCCTTTAAAAGCCTATCTGCTACAAATTCAATATATTGACACATCAAATCATAGTTT 23385 | ||||| | || ||||| ||||| |||||||| || |||||| | || Sbjct 410210 AGTTCCTGCAGCCATCTGTCTGCAACAAACTCAATATACTGTGACATCAGTTTTGCATTC 410269 Query 23386 ATACCTATTAGTTTTACTGGAATCGCATCATATAAGAA-TAGTTTTTCAATGGAAACAGC 23444 || || || || || || | ||||| | ||| || | ||||| || || || Sbjct 410270 ATCCCGATCAGGGCAACCGGCAAGGCATC-TGTAATAAATTCCTTTTCGATTTCTACCGC 410328 Query 23445 ATCTTTAATTATTTGAACAATAACTTCTTCACTAGGTGGATATTTTAAATACTTAAACAA 23504 || || ||| | || ||||| | || || || ||| | ||| | | Sbjct 410329 GTCGCGGATAATTCCATGAACGACTTCCTGGCTCAGTTTATTTTTGAGCATTTTATAAAG 410388 Query 23505 TAAACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAATGT 23564 | || ||||| |||||||| | || ||||| || |||||| |||||| ||| || Sbjct 410389 CAGGCAGGCAAATTCACAATGCATCCCCTCATCTCTGGAAATCAACTCATTACTAAAGGT 410448 Query 23565 TAATCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGATCCGGAA-A 23623 || |||||||| | |||| |||||| | ||| || || | | || | | ||| | | Sbjct 410449 TAGCCCTGGCATCAGGCCTCTTTTTTTCAACCAGAAGATCGAA-CAGAAGCTCCCGCTGA 410507 Query 23624 AGAAAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCATTATAAT 23683 ||||||| || || || || || || ||||| | |||| |||| || | | | Sbjct 410508 AGAAAATGCCTTCCACTGCGGCGAAAGCCACCAAACGTTCGGCAAAATTTCCGCCCTCA- 410566 Query 23684 CAGAAATCCAtttttttGTCCAATTAGCCTTCAATTTTACACACTCAATTGTTTCAATTG 23743 ||||| || ||| | || || |||||||| || || || | | Sbjct 410567 -----ATCCAGCGCAATGCCCATTCTGCTTTTTTCTTTACACAAGGAACCGTCTCTACGG 410621 Query 23744 CTTTTAAGAGAAAAGTTTTTTCTTCATTATCTGTTATATATGTATCAATTAGTAAACTAT 23803 | | || || |||||||||| |||| | ||||| ||||| || || | || Sbjct 410622 CATGGAACAGCCTGTCTTTTTCTTCAGGATCTTTAATATAGGTATCGATCAGCAGCGCAT 410681 Query 23804 ACATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGCTTCAG 23863 | ||||||| || || ||||| || ||||| || ||||||||||| | ||||| | Sbjct 410682 AGGTTTCAGAGTGGATGTTTTCCATCATGATCTGGAAGCCATAAAAACAACGGGCTTCGG 410741 Query 23864 ACAATTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACCATCACTAG 23923 | || || || | | || | || | ||||| || ||||| || ||||| | Sbjct 410742 GAAGCTGTACTTCGCTCATGAAGTTCACTGCAAGGTTTTCATTTACAATGCCGTCACTTG 410801 Query 23924 CAGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCAGTTGATAATTTTTTCC 23983 ||||||| |||||||| | || || ||||| | || | || ||| || | || Sbjct 410802 CAGCAAAAAAAGCAAGTATATGAGAAATGAAATGACGCTCGCCTGTATTTAAGTTGTCCC 410861 Query 23984 AATCATTAATATCTTTTGATAAATCAACTTCATCAACTGTCCAAAAACTTGC 24035 | | || || | || | |||| ||| ||| | ||||| |||||||| Sbjct 410862 AGTGCTTCTGGTCATCAGAAAGGTCAATTTCTTCAGCGGTCCAGAAACTTGC 410913 >seq531 Length=89189 Score = 111 bits (122), Expect = 2e-19 Identities = 124/166 (75%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 23800 CTATACATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGCT 23859 ||||| | || |||||||| |||||||| ||||| ||||| | || || ||| ||| Sbjct 88220 CTATAAGTCTCTGAATGAATGTTTTCAATGGCAATTTGAAAGCTGTAGAAGGATCGAGCC 88279 Query 23860 TCAGACAATTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACCATCA 23919 || | | ||| || ||| | || | | |||| |||||| || ||||| |||||| Sbjct 88280 TCTGGTATTTGGACTTCAGCCATGAAGCGAGTTGCTAGATTTTCATTTACAATGCCATCA 88339 Query 23920 CTAGCAGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCAT 23965 ||||||||||| ||||| |||| ||||||||| |||||||||| Sbjct 88340 GAGGCAGCAAAGAATGCAAGCACATGTTTTATAAAGTGTCTTTCAT 88385 >seq689 Length=46727 Score = 98.7 bits (108), Expect = 1e-15 Identities = 202/298 (68%), Gaps = 7/298 (2%) Strand=Plus/Minus Query 23508 ACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAATGTTAA 23567 ||| ||||| || || || | ||||| || | || ||||| || || ||||| || || Sbjct 18316 ACAGGCAAAGTCGCAGTGCAAACCTTCGTCACGGCTGATCAACTCGTTGGAAAAGGTCAA 18257 Query 23568 TCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTG--CAGCAAATGATCCGGAAAAG 23625 |||||||| ||||| || || || | |||||| |||| ||| || | || || || Sbjct 18256 ACCTGGCATCAATCCACGCTTCTTGAGCCAAAAGATTGAACAGAAACTA--CCAGAGAAA 18199 Query 23626 AAAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCATTATAATCA 23685 || |||||||| || || ||||| ||||| | ||| |||| | || ||| Sbjct 18198 AAGATACCCTCGACGGCTGCAAACGCCACCAAACGCTCGGCAAACGAC---TTGGAATTT 18142 Query 23686 GAAATCCAtttttttGTCCAATTAGCCTTCAATTTTACACACTCAATTGTTTCAATTGCT 23745 || |||||| | || ||| | ||||||| || ||||| ||| || || || || Sbjct 18141 GAGATCCATCTCAATGCCCAGTCAGCCTTCTTCTTGACACATGGAATAGTCTCTATGGCA 18082 Query 23746 TTTAAGAGAAAAGTTTTTTCTTCATTATCTGTTATATATGTATCAATTAGTAAACTAT 23803 || || | | | ||||| | || | ||||||||||| |||| |||||||| Sbjct 18081 TTGAACAAATTGGCCTTTTCAACTGGATTCTTAATATATGTATCGATTAATAAACTAT 18024 Score = 93.3 bits (102), Expect = 4e-14 Identities = 120/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 23800 CTATACATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGCT 23859 ||||| | || ||||||||||| ||||| ||||| || || ||||| ||||| | ||| Sbjct 17920 CTATAGGTCTCTGAATGAATATTCTCAATGGCAATTTGGAAACCATAGAAACAACGAGCC 17861 Query 23860 TCAGACAATTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACCATCA 23919 || | | ||| || || | || | | |||| || || ||||| |||||||||||| Sbjct 17860 TCTGGGATTTGGACCTCTGCCATGAAACGTGTAGCCAAGTTCTCGTTTACAATACCATCA 17801 Query 23920 CTAGCAGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCAT 23965 |||||| || || ||||| | || | ||||| || | ||||| Sbjct 17800 GAAGCAGCGAAAAAGGCAAGGATATGAGTGATAAAGTGACGTTCAT 17755 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521396707007000